Detailed information NTG0188989

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: BBI15_RS07455
• Genome accession: NZ_CP016539
• Coordinates: 1471666..1474101 (+)
• Length: 811 a.a.
• NCBI ID: WP_068868986.1
• Uniprot ID: A0A1C7E5V8
• Organism: Planococcus plakortidis strain DSM 23997
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1466666..1479101

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BBI15_RS07430 (BBI15_02885)	-	1466847..1468130 (-)	1284	WP_068868981.1	replication-associated recombination protein A	-
BBI15_RS07435 (BBI15_02890)	cymR	1468268..1468684 (+)	417	WP_068868982.1	cysteine metabolism transcriptional regulator CymR	-
BBI15_RS07440 (BBI15_02895)	-	1468699..1469832 (+)	1134	WP_068868983.1	cysteine desulfurase family protein	-
BBI15_RS07445 (BBI15_02900)	mnmA	1469847..1470965 (+)	1119	WP_068868984.1	tRNA 2-thiouridine(34) synthase MnmA	-
BBI15_RS07450 (BBI15_02905)	-	1470980..1471639 (+)	660	WP_068868985.1	tetratricopeptide repeat protein	-
BBI15_RS07455 (BBI15_02910)	recD2	1471666..1474101 (+)	2436	WP_068868986.1	ATP-dependent RecD-like DNA helicase	Machinery gene
BBI15_RS07460 (BBI15_02915)	alaS	1474404..1477028 (+)	2625	WP_068868987.1	alanine--tRNA ligase	-
BBI15_RS07465 (BBI15_02920)	-	1477118..1477384 (+)	267	WP_068872541.1	IreB family regulatory phosphoprotein	-
BBI15_RS07470 (BBI15_02925)	ruvX	1477387..1477803 (+)	417	WP_068868988.1	Holliday junction resolvase RuvX	-
BBI15_RS07475 (BBI15_02930)	-	1477817..1478125 (+)	309	WP_068868989.1	DUF1292 domain-containing protein	-

Sequence

Protein

• Length: 811 a.a.
• Molecular weight: 89742.46 Da
• Isoelectric Point: 4.9552

>NTDB_id=188989 BBI15_RS07455 WP_068868986.1 1471666..1474101(+) (recD2) [Planococcus plakortidis strain DSM 23997]
MSGQIDLFQKESEFVLGRPVVSIFHNPQNLFSIIKVKIQQTNTPYTEKEIIVSGYFPKLSLEEQYKFTGSVKNHPKYGVQ
FQAETFKKEVPETEQGVVHYLSSDLFNGIGRKTAETIVKKLGSDAIKKILEDPDALDGVPRLSDDKKDTIRSTLQMNLGL
ERVMIQLNDWGFGPQVGMRIYQAYREETIDILTKNPFQLIEEIEGIGFHRADELGSKLGITGSHPDRIKAAILHVLNQAS
LSEGHVYVDAKNLIPLVKQMLEASQREDIPVEAISQAAIELNEEGKVAGEETRLYLPSLYYSEVGIATKLETLIAEQETR
DGFPSSEIRKALGEAEERLGVNYAETQIDAIEKSLNSSVMILTGGPGTGKTTVVRGLVEVYAELHGLPLDPKDYAKKKEP
FPIILAAPTGRAAKRLSESTELPAMTIHRLLGFNGQEKDEETEKEIEGKLIIIDEMSMVDTWLAHQLLKAVPVDAQLIFV
GDQDQLPPVGPGQVLRDMLASGRIPTVELTEIYRQSSGSSIIELAHQMKAGKLPDNIEAKTSDRSFIRAGADQIPMVVEK
VVKSALSKGHTIKDIQVLAPMYKGPAGIDALNQMIQQMVNPNDDGSRKELAFGDITYRIGDKVLQLVNQPESNVFNGDMG
EVVAIMKAKETVEKQDVLVVSFDGIEVTYQRSDLNQLTLAYCCSIHKAQGSEFPTVIMPVVRGYMKMLRRNLLYTGITRS
RDFLILCGDPGVFRYGVERTDDSSRLTTLADRLGASAEGQADMPPGEAKPVAQQPPESEEAESKSLTQQNAHRIHPMIGM
EGITPRDFQDA

Nucleotide

• Length: 2436 bp

>NTDB_id=188989 BBI15_RS07455 WP_068868986.1 1471666..1474101(+) (recD2) [Planococcus plakortidis strain DSM 23997]
ATGTCCGGACAGATCGATTTATTCCAAAAAGAAAGTGAATTTGTGCTGGGGCGTCCGGTCGTCTCGATTTTTCACAACCC
CCAAAACCTCTTCTCCATCATCAAAGTGAAAATCCAGCAAACCAACACCCCCTATACGGAAAAGGAAATCATCGTCTCCG
GCTATTTCCCTAAGCTGTCGCTTGAAGAGCAATACAAATTCACCGGCAGCGTCAAGAACCATCCGAAATACGGCGTGCAG
TTCCAAGCTGAAACCTTCAAGAAAGAGGTGCCGGAAACTGAACAAGGCGTCGTGCATTATTTGTCGAGCGATTTGTTCAA
CGGCATCGGGCGCAAAACCGCCGAGACGATCGTCAAGAAACTCGGCAGCGATGCCATCAAGAAAATCCTGGAAGACCCGG
ATGCGCTCGATGGGGTCCCGCGCCTGTCCGATGATAAAAAAGACACGATCCGTTCAACCTTGCAGATGAACTTGGGGCTT
GAACGCGTGATGATCCAATTGAACGACTGGGGGTTCGGGCCGCAAGTCGGCATGCGAATCTACCAGGCATACCGCGAGGA
AACGATCGATATCCTGACGAAGAACCCCTTCCAGCTCATCGAGGAAATCGAGGGCATCGGCTTCCACCGCGCAGATGAAC
TCGGGTCGAAGCTCGGCATCACCGGCAGCCATCCCGACCGCATCAAAGCGGCGATCCTCCATGTCTTGAACCAGGCATCG
TTGTCGGAAGGGCATGTCTATGTCGATGCGAAGAACCTGATTCCGCTCGTCAAGCAAATGCTTGAAGCGAGCCAACGCGA
GGACATTCCGGTCGAAGCGATTTCACAGGCCGCCATCGAATTGAACGAGGAAGGCAAAGTGGCGGGGGAAGAAACCCGCC
TTTATTTGCCGTCGCTGTACTATTCGGAAGTGGGCATCGCGACGAAGCTCGAGACCTTGATCGCCGAGCAGGAGACGCGC
GACGGTTTCCCGTCCTCCGAAATCCGCAAAGCGCTCGGCGAAGCGGAAGAGCGGCTCGGCGTCAATTATGCGGAGACACA
AATCGACGCCATCGAGAAAAGCTTGAATTCGAGTGTCATGATCCTTACCGGCGGACCCGGGACCGGCAAGACGACCGTCG
TCCGGGGATTGGTCGAAGTATACGCAGAGCTGCACGGGCTGCCGCTCGACCCGAAAGACTACGCCAAGAAAAAAGAGCCC
TTCCCGATCATCCTGGCAGCTCCTACAGGGCGCGCGGCAAAGCGCTTGAGTGAGTCGACGGAACTTCCGGCCATGACCAT
TCACCGCCTGCTCGGCTTTAACGGGCAGGAGAAAGATGAGGAAACCGAAAAGGAAATCGAAGGCAAACTGATCATCATCG
ACGAAATGTCGATGGTCGACACGTGGCTCGCCCATCAATTATTGAAAGCGGTGCCTGTCGACGCGCAGTTGATCTTTGTG
GGCGACCAGGATCAATTGCCTCCGGTCGGCCCCGGGCAAGTGCTGAGGGATATGCTGGCATCCGGCCGCATCCCGACGGT
CGAGCTGACGGAAATCTACCGCCAAAGTTCCGGCTCATCGATCATCGAGCTCGCGCACCAAATGAAAGCCGGGAAACTGC
CGGACAATATCGAAGCGAAGACGTCCGACCGCTCGTTCATCCGCGCAGGGGCAGACCAGATCCCGATGGTCGTCGAAAAA
GTGGTCAAGAGCGCTTTGTCAAAAGGCCATACGATCAAAGACATCCAAGTGCTCGCGCCGATGTACAAAGGGCCAGCTGG
CATCGATGCGCTGAACCAGATGATCCAGCAGATGGTCAACCCGAACGATGACGGCTCACGCAAGGAGCTGGCATTCGGTG
ACATCACCTACCGCATAGGCGATAAGGTGCTGCAGCTTGTCAACCAACCCGAGAGCAATGTCTTTAACGGCGATATGGGC
GAAGTGGTTGCCATCATGAAAGCGAAAGAGACGGTGGAAAAGCAGGATGTGCTCGTCGTATCGTTCGATGGCATCGAAGT
GACCTATCAGCGCAGCGACTTGAACCAGCTGACGCTCGCTTATTGCTGTTCGATCCATAAAGCCCAAGGTTCGGAATTCC
CGACGGTCATCATGCCGGTCGTCCGCGGCTATATGAAAATGCTGCGGCGCAATTTGCTTTACACTGGGATCACGAGAAGC
CGCGACTTCTTGATCTTGTGCGGCGACCCGGGCGTGTTCCGCTACGGCGTCGAACGCACCGATGATTCGAGCCGGTTGAC
GACCTTGGCGGACCGGCTGGGCGCATCCGCTGAAGGGCAGGCGGACATGCCGCCTGGTGAAGCAAAACCGGTAGCACAGC
AGCCACCCGAGAGCGAAGAGGCGGAATCGAAAAGCCTGACGCAGCAAAATGCTCACCGCATCCATCCGATGATCGGCATG
GAAGGGATCACGCCGCGCGACTTCCAGGATGCGTAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_30) (343-550)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (591-660)

• Helix-hairpin-helix containing domain (HHH_RecD2) (159-247)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (680-727)

3D structure

• AlphaFold DB: A0A1C7E5V8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	55.168	99.014	0.546