Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   BBI08_RS07230 Genome accession   NZ_CP016537
Coordinates   1441732..1444149 (+) Length   805 a.a.
NCBI ID   WP_065527910.1    Uniprot ID   A0A1C7DNQ4
Organism   Planococcus halocryophilus strain DSM 24743     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1436732..1449149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBI08_RS07210 (BBI08_02880) cymR 1438340..1438756 (+) 417 WP_008498954.1 cysteine metabolism transcriptional regulator CymR -
  BBI08_RS07215 (BBI08_02885) - 1438771..1439904 (+) 1134 WP_065527907.1 cysteine desulfurase family protein -
  BBI08_RS07220 (BBI08_02890) mnmA 1439918..1441033 (+) 1116 WP_065527908.1 tRNA 2-thiouridine(34) synthase MnmA -
  BBI08_RS07225 (BBI08_02895) - 1441048..1441707 (+) 660 WP_205847840.1 tetratricopeptide repeat protein -
  BBI08_RS07230 (BBI08_02900) recD2 1441732..1444149 (+) 2418 WP_065527910.1 ATP-dependent RecD-like DNA helicase Machinery gene
  BBI08_RS07235 (BBI08_02905) alaS 1444736..1447360 (+) 2625 WP_008498955.1 alanine--tRNA ligase -
  BBI08_RS07240 (BBI08_02910) - 1447450..1447716 (+) 267 WP_006828732.1 IreB family regulatory phosphoprotein -
  BBI08_RS07245 (BBI08_02915) ruvX 1447719..1448135 (+) 417 WP_040851237.1 Holliday junction resolvase RuvX -
  BBI08_RS07250 (BBI08_02920) - 1448149..1448460 (+) 312 WP_008498957.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 805 a.a.        Molecular weight: 89966.16 Da        Isoelectric Point: 5.0438

>NTDB_id=188915 BBI08_RS07230 WP_065527910.1 1441732..1444149(+) (recD2) [Planococcus halocryophilus strain DSM 24743]
MTGQIDLFQEEKQFVLGRPVVSIFHNPQNLFSIAKVKIQETNTPYTEKEIIVSGYFPMLTLEEQYRFTGVVKNHPRYGVQ
FQVETFTKEVPETEQGIIHYLSSDMFNGIGRKTAETIVKKLGKDAIKKILEDPDSLDKVPRLSDDKKDTIRATLQMNLGL
ERVMIQLNDWGFGPQIGMRIYQAYREETIDILTKNPFQLIEEIEGIGFQRADELGMKLGITGSHPDRIKASILHILNQAS
LSDGHVYVDAKTLIPMVKEMLEARQQAEISIEAISKAAIELNEEGKVAGEETRLYLPSLYYSEVGIATKLETLLLEQESR
AKFPSSEIRKALGEAEERLGVNYAETQIDAIESSINSSVMILTGGPGTGKTTVVRGLVEIYAELHGLSLDPKEYAKKQEP
FPIILAAPTGRAAKRLSESTELPAMTIHRLLGFNGQEKDEETEKEIEGKLIIIDEMSMVDTWLAHQLLKAVPEDAQLIFV
GDQDQLPPVGPGQVLRDLLESKRIPTVELTDIYRQSSGSSIIELAHQMKNGQLPEDITVKTADRSFIKAGADQIPIVVEK
VVKSALSKGHSIKDIQVLAPMYKGPAGIDALNRLIQEMVNPNPDGKRKELVFGDITYRIGDKILQLVNQPESNVFNGDMG
EVVAIMKAKETVEKQDMLVASFDGIEVTYERSDLNQLTLAYCCSIHKSQGSEFPTVIMPIVRGYMKMLRRNLLYTGITRS
KDFLVLCGDPSAFRYGVERTDDTQRMTTLQSRLAVSTEEPKTDQQIKQHEETKQSGPVSLTTENAHSIHPMIGMEGITPQ
KFMEA

Nucleotide


Download         Length: 2418 bp        

>NTDB_id=188915 BBI08_RS07230 WP_065527910.1 1441732..1444149(+) (recD2) [Planococcus halocryophilus strain DSM 24743]
ATGACCGGACAAATCGATTTATTTCAAGAAGAAAAACAATTTGTATTAGGGCGTCCTGTCGTCTCAATTTTTCATAATCC
CCAAAATTTATTCTCCATCGCAAAAGTGAAAATCCAAGAAACCAACACCCCTTATACCGAAAAAGAAATCATTGTTTCTG
GTTATTTCCCCATGTTAACTCTTGAAGAGCAATATCGTTTTACCGGCGTGGTAAAAAATCACCCGCGTTACGGTGTTCAA
TTTCAAGTAGAAACATTTACAAAAGAAGTGCCTGAAACTGAACAAGGCATTATTCATTATTTATCGAGTGATATGTTTAA
CGGCATAGGCCGAAAAACGGCTGAAACCATCGTTAAAAAACTAGGCAAAGATGCCATCAAAAAGATTTTAGAAGACCCAG
ATTCACTAGACAAAGTTCCGCGTTTATCTGATGACAAAAAAGATACCATTCGTGCCACGCTTCAAATGAACTTAGGACTT
GAACGCGTCATGATTCAATTAAATGATTGGGGCTTTGGTCCACAAATCGGCATGCGGATTTATCAAGCGTACCGTGAAGA
AACAATTGATATTTTGACGAAAAATCCATTTCAATTGATTGAAGAAATCGAAGGAATTGGGTTTCAACGTGCTGATGAAC
TAGGGATGAAGCTAGGCATTACAGGAAGTCATCCGGACCGTATTAAGGCCTCTATTTTACATATTCTCAACCAAGCTTCG
TTATCGGATGGACATGTGTATGTTGATGCCAAAACTTTGATCCCGATGGTCAAAGAAATGCTTGAAGCGCGTCAACAAGC
AGAAATTTCGATTGAAGCGATCTCCAAAGCAGCAATCGAATTAAATGAAGAAGGCAAAGTAGCGGGTGAAGAAACTCGGC
TTTATTTGCCGTCGCTGTATTATTCAGAAGTGGGCATTGCGACTAAACTAGAAACTTTATTATTAGAACAGGAATCGCGT
GCGAAATTCCCGAGTTCAGAAATTCGAAAAGCGCTTGGTGAAGCGGAAGAACGGCTCGGTGTTAATTATGCTGAAACGCA
AATTGACGCAATCGAAAGTAGCATCAATTCATCGGTCATGATTTTAACAGGAGGACCGGGTACAGGAAAAACAACCGTCG
TTCGTGGACTCGTAGAAATTTATGCCGAACTGCATGGATTGTCGCTCGATCCAAAAGAATATGCTAAAAAACAAGAGCCG
TTTCCAATCATTCTCGCAGCTCCAACTGGACGTGCAGCAAAACGTTTGAGTGAATCAACCGAGCTACCAGCGATGACGAT
TCACCGTTTACTCGGCTTTAACGGTCAAGAAAAAGACGAAGAAACCGAAAAAGAAATCGAAGGCAAATTGATCATTATCG
ACGAAATGTCAATGGTCGACACCTGGCTTGCGCACCAATTGCTAAAAGCAGTACCAGAAGACGCACAATTGATTTTTGTT
GGTGACCAAGATCAATTGCCGCCGGTCGGCCCAGGCCAAGTATTGCGTGATTTACTCGAATCAAAACGAATACCGACAGT
CGAATTAACAGACATATACCGACAATCTTCAGGTTCATCAATAATAGAACTTGCGCACCAAATGAAAAACGGTCAATTGC
CAGAAGACATTACAGTGAAAACGGCAGATCGTTCTTTTATTAAAGCTGGTGCTGATCAAATTCCTATAGTTGTTGAAAAA
GTCGTAAAAAGTGCCTTGTCCAAAGGGCATTCGATTAAAGACATACAAGTGCTCGCGCCAATGTACAAAGGACCTGCAGG
AATCGATGCCTTAAACCGACTCATTCAAGAAATGGTCAACCCAAATCCTGATGGCAAACGAAAAGAGCTGGTGTTTGGGG
ACATCACCTACCGAATTGGCGATAAAATACTTCAACTTGTCAATCAACCTGAAAGCAATGTTTTTAACGGCGATATGGGC
GAAGTTGTTGCCATCATGAAAGCAAAAGAAACGGTTGAAAAACAAGACATGTTGGTTGCTTCCTTTGATGGAATCGAAGT
TACTTACGAACGTAGCGATTTAAACCAATTAACATTAGCTTACTGCTGTTCCATTCATAAATCCCAAGGCTCGGAATTTC
CAACGGTTATTATGCCAATTGTTCGAGGCTATATGAAAATGTTGCGCCGCAACTTGCTTTATACCGGCATCACACGAAGT
AAAGACTTTCTCGTGCTATGCGGCGACCCAAGTGCCTTCCGTTACGGAGTTGAACGAACAGACGATACGCAACGCATGAC
CACACTGCAAAGCCGTCTAGCAGTCTCAACAGAAGAACCGAAAACCGACCAACAAATAAAGCAACACGAAGAAACAAAAC
AAAGCGGACCAGTAAGCTTAACAACCGAAAATGCCCACTCCATCCACCCAATGATCGGTATGGAAGGCATCACACCACAA
AAATTTATGGAAGCATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-247)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-652)

AAA domain (AAA_30)

(343-550)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-727)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C7DNQ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

55.764

99.13

0.553

Multiple sequence alignment