Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   BBP08_RS02530 Genome accession   NZ_CP016501
Coordinates   498423..500240 (+) Length   605 a.a.
NCBI ID   WP_069571452.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain WC1535     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 493423..505240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBP08_RS02510 (BBP08_02380) gdhA 493729..495078 (+) 1350 WP_000200435.1 NADP-specific glutamate dehydrogenase -
  BBP08_RS02515 (BBP08_02385) - 495148..495558 (+) 411 WP_000594935.1 peptide deformylase -
  BBP08_RS02520 (BBP08_02390) - 495595..497667 (-) 2073 WP_000726930.1 bifunctional metallophosphatase/5'-nucleotidase -
  BBP08_RS02525 (BBP08_02395) - 497936..498376 (+) 441 WP_000431168.1 MarR family winged helix-turn-helix transcriptional regulator -
  BBP08_RS02530 (BBP08_02400) rcrP 498423..500240 (+) 1818 WP_069571452.1 ABC transporter ATP-binding protein Regulator
  BBP08_RS02535 (BBP08_02405) rcrQ 500230..501984 (+) 1755 WP_000851084.1 ABC transporter ATP-binding protein Regulator
  BBP08_RS02540 (BBP08_02410) - 502092..502718 (+) 627 WP_000449636.1 GTP pyrophosphokinase family protein -
  BBP08_RS02545 (BBP08_02415) - 502720..503406 (+) 687 WP_001264422.1 response regulator transcription factor -
  BBP08_RS02550 (BBP08_02420) - 503406..504635 (+) 1230 WP_000489520.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 67440.20 Da        Isoelectric Point: 6.7838

>NTDB_id=188613 BBP08_RS02530 WP_069571452.1 498423..500240(+) (rcrP) [Streptococcus agalactiae strain WC1535]
MFNIFKRLNGKEWLMIVASTILVCLAVWMDLKTPEYMSDITRMLQTKGTKLEALWDPGLKMLAFSFGSFLVAVMVGFLGA
RTAASFTSRLRSDIFNHVMDYSDAEIKRFSIPSLLTRTTNDLTQLQILIVMGMQVVTRGLIMAIWALTKIWGKSDQWTGA
VGVAVIIVMILLSVLLLLAFPRQRQIQGFTDALNATTREALSGVRVIRAYNAEKYQTDKFKRENDDLTKLNLFVYRLMSL
MNPVMTVVSSGLTLAIYWIGSYLINDISVPKVTGTSVSVLAAKSAITDRVDLFSNMVVFSSYAMQVVMGFMMMVAIFIIM
PRALVSARRINEVLTLAPTVTFKENSHIQSAQKGQIEFQDVSFHYSKDSEAVIEHVSFKADTGQTVAFIGSTGSGKSTLV
NLVPRFYDATEGAIKLDGIDIKEYSHNDLNNKIGYIPQKAVLFSGTVRSNMILGESGREELSDEEIWQALELAQAKEFIE
AKEKGLDTEVAQGGSNFSGGQKQRLAIARALARHPEILIFDDSFSALDYKTDHILRHEVKEKTAAMTKLIVAQRISTIMD
ADLILVLDQGKVVGQGTHKELLSNNEVYQEIAYSQLSKEELENEN

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=188613 BBP08_RS02530 WP_069571452.1 498423..500240(+) (rcrP) [Streptococcus agalactiae strain WC1535]
ATGTTTAATATTTTCAAGCGACTCAATGGTAAAGAATGGTTGATGATTGTGGCGAGTACTATATTAGTGTGTCTAGCGGT
TTGGATGGACCTAAAGACTCCAGAATATATGTCTGATATCACACGTATGTTGCAAACTAAAGGTACAAAGTTAGAGGCTC
TTTGGGATCCTGGACTAAAAATGCTTGCCTTTTCATTTGGTAGTTTTTTAGTAGCAGTAATGGTAGGTTTTTTAGGTGCT
AGGACAGCAGCTAGTTTTACTAGTCGATTACGTTCAGATATTTTTAACCATGTGATGGATTATTCTGATGCAGAAATTAA
GCGATTTTCTATCCCCTCTCTATTAACGCGCACAACTAACGACTTGACTCAGCTACAGATCCTTATTGTAATGGGAATGC
AGGTTGTTACCCGTGGACTAATTATGGCAATATGGGCTTTGACTAAAATTTGGGGTAAAAGCGATCAATGGACTGGGGCA
GTTGGAGTAGCGGTTATTATCGTTATGATATTACTTAGCGTTCTACTCTTACTCGCTTTTCCGAGACAACGTCAAATCCA
AGGTTTTACAGATGCGCTTAATGCAACTACTAGAGAGGCACTCTCTGGTGTTAGAGTTATTCGTGCCTACAATGCTGAAA
AGTATCAAACAGATAAGTTCAAACGTGAAAATGACGATTTAACAAAATTGAACCTTTTTGTTTATAGATTGATGTCGCTT
ATGAATCCTGTGATGACAGTGGTTTCATCTGGATTGACTTTAGCTATTTATTGGATTGGCTCTTATTTGATTAATGATAT
CTCTGTGCCTAAAGTTACAGGAACAAGTGTATCTGTATTGGCTGCTAAATCAGCTATCACTGATCGAGTGGATCTTTTTT
CAAACATGGTTGTTTTTTCATCTTATGCTATGCAAGTTGTTATGGGATTTATGATGATGGTAGCTATTTTTATCATCATG
CCTCGTGCTTTAGTATCGGCTAGACGTATTAATGAGGTACTAACTTTAGCCCCAACAGTAACTTTTAAAGAAAATAGTCA
TATTCAAAGTGCACAAAAAGGTCAAATTGAGTTTCAAGATGTGTCATTTCATTATAGTAAAGATTCTGAAGCGGTTATTG
AACATGTATCTTTCAAAGCAGATACTGGTCAGACAGTGGCATTTATTGGGTCTACAGGTTCTGGAAAATCCACTTTAGTC
AATTTAGTTCCACGTTTTTATGACGCCACAGAGGGGGCAATTAAACTTGATGGCATTGATATAAAGGAATACTCTCACAA
TGATTTGAATAATAAAATTGGCTATATTCCACAGAAAGCTGTTCTCTTTAGTGGGACAGTACGTTCTAATATGATTTTGG
GAGAGAGTGGCAGGGAGGAACTTAGTGATGAAGAAATTTGGCAAGCACTCGAATTAGCGCAAGCTAAAGAATTTATCGAG
GCTAAAGAAAAAGGATTAGATACAGAAGTCGCTCAAGGTGGTAGTAACTTTTCAGGAGGACAAAAACAACGCTTGGCAAT
TGCACGTGCTTTAGCACGTCACCCTGAAATTCTCATTTTTGATGACTCATTTTCAGCGTTAGATTATAAAACAGATCATA
TTTTACGCCATGAGGTGAAAGAAAAAACAGCTGCTATGACGAAATTAATTGTCGCTCAACGCATTTCAACTATCATGGAT
GCTGATCTCATTTTAGTGCTAGATCAAGGTAAAGTTGTTGGGCAAGGAACACATAAGGAATTGTTATCAAATAATGAAGT
GTATCAAGAGATAGCCTATTCTCAATTGTCTAAGGAGGAATTGGAAAATGAAAACTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(374-523)

ABC transporter transmembrane region (ABC_membrane)

(58-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

77.778

99.669

0.775

Multiple sequence alignment