Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   A4W75_RS01325 Genome accession   NZ_CP016467
Coordinates   271769..272326 (+) Length   185 a.a.
NCBI ID   WP_039098349.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain TMW 1.27     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 266769..277326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W75_RS01300 (A4W75_01245) - 266818..267930 (+) 1113 WP_039098346.1 PIN/TRAM domain-containing protein -
  A4W75_RS01305 (A4W75_01250) cysS 268472..269878 (+) 1407 WP_253732678.1 cysteine--tRNA ligase -
  A4W75_RS01310 (A4W75_01255) - 269875..270282 (+) 408 WP_004265086.1 Mini-ribonuclease 3 -
  A4W75_RS01315 (A4W75_01260) rlmB 270269..271156 (+) 888 WP_148484572.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  A4W75_RS01320 (A4W75_01265) - 271160..271693 (+) 534 WP_065825220.1 NYN domain-containing protein -
  A4W75_RS01325 (A4W75_01270) sigH 271769..272326 (+) 558 WP_039098349.1 sigma-70 family RNA polymerase sigma factor Regulator
  A4W75_RS01330 (A4W75_01275) - 272605..272922 (+) 318 WP_004265021.1 PTS sugar transporter subunit IIB -
  A4W75_RS10935 - 273055..273228 (+) 174 WP_336275709.1 YccF domain-containing protein -
  A4W75_RS10940 - 273261..273386 (+) 126 WP_336275710.1 YccF domain-containing protein -
  A4W75_RS01340 (A4W75_01285) - 273537..275479 (-) 1943 Protein_268 ABC-F family ATP-binding cassette domain-containing protein -
  A4W75_RS01345 (A4W75_01290) - 275675..276322 (+) 648 WP_065825222.1 redox-sensing transcriptional repressor Rex -
  A4W75_RS01350 (A4W75_01295) - 276375..277007 (-) 633 WP_004265005.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 21752.94 Da        Isoelectric Point: 6.6648

>NTDB_id=188437 A4W75_RS01325 WP_039098349.1 271769..272326(+) (sigH) [Latilactobacillus curvatus strain TMW 1.27]
MESAKRDANLIQAVVENDSEALDVLFKAYLPMVYRTFTPYYIRLFDEDDWLQEARIVCYETCQCYDQNCGKSFGGFYKLR
FHHHVLNLIRKELAQKRRVDQQALLFDCCPECNALAEDTVAYYQSTVEMRAYLETLSALELVAFRVLTGQLAVEQACRQL
DCTFEQMKRAQSRCQTKLKRFYTKQ

Nucleotide


Download         Length: 558 bp        

>NTDB_id=188437 A4W75_RS01325 WP_039098349.1 271769..272326(+) (sigH) [Latilactobacillus curvatus strain TMW 1.27]
ATGGAATCAGCAAAACGTGATGCAAACTTAATTCAAGCGGTGGTTGAAAACGATTCTGAGGCGTTGGATGTTTTATTTAA
AGCCTACCTACCAATGGTTTATCGCACCTTTACTCCATATTATATTCGCTTATTTGATGAGGACGATTGGTTACAAGAAG
CGCGAATCGTCTGTTATGAGACTTGCCAGTGTTATGATCAAAATTGCGGCAAAAGTTTTGGTGGTTTTTATAAATTACGC
TTTCACCACCACGTATTAAACTTGATTCGCAAAGAACTTGCTCAGAAACGACGGGTCGATCAGCAAGCCCTGTTATTTGA
TTGTTGTCCGGAATGCAATGCGCTCGCTGAAGATACCGTGGCATACTATCAGTCAACGGTTGAAATGCGGGCGTACTTAG
AGACACTATCTGCTTTAGAGTTAGTGGCCTTTCGGGTTTTGACGGGGCAACTAGCAGTTGAGCAAGCGTGTCGTCAGCTA
GATTGCACGTTTGAACAGATGAAACGGGCACAATCGCGTTGCCAGACAAAATTAAAACGATTCTATACTAAACAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Latilactobacillus sakei subsp. sakei 23K

73.077

98.378

0.719

Multiple sequence alignment