Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   A4W81_RS01155 Genome accession   NZ_CP016465
Coordinates   232536..233096 (+) Length   186 a.a.
NCBI ID   WP_056947508.1    Uniprot ID   A0AAX0VCZ0
Organism   Latilactobacillus sakei strain TMW 1.3     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 227536..238096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W81_RS01130 (A4W81_01120) - 227767..228807 (+) 1041 WP_350028516.1 PIN/TRAM domain-containing protein -
  A4W81_RS01135 (A4W81_01125) cysS 229238..230644 (+) 1407 WP_056947506.1 cysteine--tRNA ligase -
  A4W81_RS01140 (A4W81_01130) - 230641..231048 (+) 408 WP_004265086.1 Mini-ribonuclease 3 -
  A4W81_RS01145 (A4W81_01135) rlmB 231035..231922 (+) 888 WP_082267809.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  A4W81_RS01150 (A4W81_01140) - 231926..232458 (+) 533 Protein_207 NYN domain-containing protein -
  A4W81_RS01155 (A4W81_01145) sigH 232536..233096 (+) 561 WP_056947508.1 sigma-70 family RNA polymerase sigma factor Regulator
  A4W81_RS01160 (A4W81_01150) rpmG 233222..233371 (+) 150 WP_011375366.1 50S ribosomal protein L33 -
  A4W81_RS01165 (A4W81_01155) secE 233387..233560 (+) 174 WP_016265665.1 preprotein translocase subunit SecE -
  A4W81_RS01170 (A4W81_01160) nusG 233658..234206 (+) 549 WP_011375364.1 transcription termination/antitermination protein NusG -
  A4W81_RS01175 (A4W81_01165) - 234664..235527 (+) 864 WP_231953437.1 alpha/beta fold hydrolase -
  A4W81_RS01180 (A4W81_01170) rplK 235653..236078 (+) 426 WP_004270859.1 50S ribosomal protein L11 -
  A4W81_RS01185 (A4W81_01175) rplA 236177..236866 (+) 690 WP_004270847.1 50S ribosomal protein L1 -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 22089.28 Da        Isoelectric Point: 7.4752

>NTDB_id=188401 A4W81_RS01155 WP_056947508.1 232536..233096(+) (sigH) [Latilactobacillus sakei strain TMW 1.3]
MEQTKRDKMLIAAVAQNDSQALDVLFKAYLPMVYHTVAPYYIRLFDEDDWLQEARIVCYETCQCYDCQKGKSFGSFYKLR
FKNHILNLLRRELAQKRRGDRQAVLIAERPEHDAISEDTMTYYQSQFELRCYLETLSPFELVSFRVLTGQLSIDEACCQL
DCTIDQLKRGQSRCQTKLKRYYQENR

Nucleotide


Download         Length: 561 bp        

>NTDB_id=188401 A4W81_RS01155 WP_056947508.1 232536..233096(+) (sigH) [Latilactobacillus sakei strain TMW 1.3]
ATGGAACAAACAAAGCGCGACAAAATGCTGATTGCAGCAGTGGCTCAGAATGATTCACAAGCACTAGATGTATTATTCAA
GGCGTATTTGCCGATGGTGTATCACACCGTGGCGCCATATTATATCCGGTTATTCGATGAAGACGATTGGTTACAAGAAG
CCCGGATTGTTTGTTACGAAACTTGCCAATGTTACGATTGTCAAAAAGGCAAAAGTTTTGGGAGTTTCTATAAATTACGG
TTTAAAAACCACATTTTAAATTTACTACGACGAGAACTCGCACAAAAACGGCGAGGTGATCGTCAGGCAGTATTGATTGC
GGAGCGACCGGAACACGACGCGATTTCAGAAGATACGATGACTTACTATCAATCGCAGTTTGAATTGCGATGTTATCTTG
AAACGCTGTCGCCTTTTGAATTAGTGTCGTTTCGGGTGCTGACCGGGCAGCTTTCAATTGATGAAGCTTGTTGCCAACTC
GATTGTACGATTGATCAGTTGAAACGGGGCCAATCAAGGTGTCAGACTAAGTTAAAACGGTATTATCAAGAGAATCGTTA
A

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(25-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Latilactobacillus sakei subsp. sakei 23K

96.774

100

0.968

Multiple sequence alignment