Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   BAY21_RS03830 Genome accession   NZ_CP016439
Coordinates   729324..730262 (-) Length   312 a.a.
NCBI ID   WP_011226817.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CS8     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 724324..735262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAY21_RS03810 (BAY21_03810) - 725863..726726 (-) 864 WP_011226821.1 Rgg/GadR/MutR family transcriptional regulator -
  BAY21_RS03815 (BAY21_03815) dusB 726929..727906 (-) 978 WP_011680674.1 tRNA dihydrouridine synthase DusB -
  BAY21_RS03820 (BAY21_03820) hslO 727899..728765 (-) 867 WP_041826953.1 Hsp33 family molecular chaperone HslO -
  BAY21_RS03825 (BAY21_03825) - 728846..729100 (-) 255 WP_011226818.1 hypothetical protein -
  BAY21_RS03830 (BAY21_03830) amiF 729324..730262 (-) 939 WP_011226817.1 ABC transporter ATP-binding protein Regulator
  BAY21_RS09775 - 730264..731306 (-) 1043 Protein_748 ABC transporter ATP-binding protein -
  BAY21_RS03850 (BAY21_03850) - 731320..732353 (-) 1034 Protein_749 ABC transporter permease -
  BAY21_RS03855 (BAY21_03855) - 732364..732582 (-) 219 Protein_750 ABC transporter permease subunit -
  BAY21_RS03860 (BAY21_03860) - 732584..733597 (-) 1014 Protein_751 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 35298.86 Da        Isoelectric Point: 6.0546

>NTDB_id=188243 BAY21_RS03830 WP_011226817.1 729324..730262(-) (amiF) [Streptococcus thermophilus strain CS8]
MTQERKKLVELKNVSLTFNKGKSNEVEAIDDVSFDIYEGEIFGLVGESGSGKTTIGRSVLKLSDIDSGTVTFSGNEISSL
KGKDLHDFRKTDQMIFQDPQSSLNGRMKIRDIIAEGIDIHKLAKSKEEREAKVKELIDLVGLNEDHLSRYPHEFSGGQRQ
RIGIARALAVNHHFIVADEPISALDVSIQAQVVNLMQKLQHEQGLTYLFIAHDLSMVKYISDRIGVMHWGKLLEVGPADE
IYHNPIHPYTKSLLSAIPEPDPERERKRQHLIYDSSIENDGENRQMYEIRPGHFVYATEAEAKNYKEEAKSN

Nucleotide


Download         Length: 939 bp        

>NTDB_id=188243 BAY21_RS03830 WP_011226817.1 729324..730262(-) (amiF) [Streptococcus thermophilus strain CS8]
ATGACACAAGAACGTAAAAAGTTAGTAGAACTAAAAAATGTGTCTCTAACTTTTAATAAAGGAAAATCAAACGAGGTTGA
GGCTATTGATGACGTTAGCTTTGATATCTATGAGGGCGAAATTTTTGGACTAGTTGGAGAATCTGGATCAGGTAAAACAA
CCATTGGGCGATCTGTTTTAAAACTTTCTGATATTGATTCGGGTACTGTTACCTTTTCAGGTAATGAGATATCAAGTTTA
AAAGGGAAAGATCTTCATGATTTCCGTAAGACAGATCAGATGATCTTTCAAGATCCTCAATCTAGTCTTAATGGACGCAT
GAAAATCCGTGATATTATTGCTGAAGGCATTGATATTCATAAATTGGCTAAATCTAAGGAAGAGCGTGAAGCTAAGGTTA
AAGAACTCATTGATTTGGTAGGGTTAAATGAAGATCACCTATCAAGATATCCTCATGAGTTTTCTGGTGGTCAACGTCAA
AGAATTGGTATTGCGCGTGCTTTAGCGGTTAATCATCATTTTATTGTAGCAGACGAACCGATTTCTGCTTTGGATGTTTC
TATTCAAGCACAAGTGGTTAATTTGATGCAGAAGTTGCAACATGAACAGGGGTTAACTTATTTGTTTATTGCCCATGACC
TATCGATGGTTAAATATATATCCGATCGTATTGGTGTAATGCATTGGGGTAAACTTCTTGAAGTGGGACCAGCAGATGAG
ATCTATCATAACCCGATTCATCCTTATACAAAGAGTCTATTATCTGCAATTCCAGAACCAGATCCAGAAAGAGAGCGTAA
GCGTCAGCATTTGATTTACGATTCCTCTATTGAAAATGATGGGGAAAATAGACAAATGTATGAAATCCGACCAGGGCATT
TTGTTTATGCTACAGAAGCAGAGGCTAAAAATTATAAAGAAGAAGCCAAGTCTAATTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(30-181)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

53.443

97.756

0.522
  amiF Streptococcus thermophilus LMG 18311

53.115

97.756

0.519
  amiF Streptococcus salivarius strain HSISS4

52.787

97.756

0.516

Multiple sequence alignment