Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   VSVS05_RS13195 Genome accession   NZ_CP016414
Coordinates   2897167..2897874 (-) Length   235 a.a.
NCBI ID   WP_406853071.1    Uniprot ID   -
Organism   Vibrio scophthalmi strain VS-05     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2892167..2902874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VSVS05_RS13180 (VSVS05_02698) cysQ 2894826..2895653 (-) 828 WP_005596941.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  VSVS05_RS13185 (VSVS05_02699) nudE 2895679..2896227 (-) 549 WP_005596939.1 ADP compounds hydrolase NudE -
  VSVS05_RS13190 (VSVS05_02700) nfuA 2896472..2897059 (-) 588 WP_005596938.1 Fe-S biogenesis protein NfuA -
  VSVS05_RS13195 (VSVS05_02701) comF 2897167..2897874 (-) 708 WP_406853071.1 ComF family protein Machinery gene
  VSVS05_RS13200 (VSVS05_02702) bioH 2897987..2898829 (+) 843 WP_065545866.1 pimeloyl-ACP methyl ester esterase BioH -
  VSVS05_RS13205 (VSVS05_02703) - 2898921..2899391 (+) 471 WP_005596930.1 hypothetical protein -
  VSVS05_RS13210 (VSVS05_02704) - 2899523..2901853 (-) 2331 WP_065545867.1 Tex family protein -
  VSVS05_RS13215 (VSVS05_02705) greB 2902013..2902501 (-) 489 WP_005596926.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26868.36 Da        Isoelectric Point: 8.8433

>NTDB_id=188168 VSVS05_RS13195 WP_406853071.1 2897167..2897874(-) (comF) [Vibrio scophthalmi strain VS-05]
MLIQWWQKNRQHVLAHYCQHCLLPIEGRDQPGPGSWLLCQACLEGLSIPSRCQCCGMTTLHPVAQCGHCLSQPPAWRQLY
CVGDYTPPLSDYVQQLKFARQLHYVEVLADLLALKIQPNIQMITYVPLHWHRQLWRGFNQSEFLARALAQRLGLPCRALF
KRTRATRSQRGMDRLQRQRNLRGAFTLTKSVTELQSVAIVDDVVTTGSTVQQLCKLLLDAGVKSVDIYCICRTPE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=188168 VSVS05_RS13195 WP_406853071.1 2897167..2897874(-) (comF) [Vibrio scophthalmi strain VS-05]
ATGTTAATCCAATGGTGGCAGAAAAACAGACAGCATGTGCTGGCTCATTATTGCCAACACTGTTTGCTGCCGATAGAGGG
GCGTGACCAGCCAGGCCCTGGGTCATGGTTATTGTGCCAAGCGTGCTTGGAAGGACTAAGCATACCGTCTCGTTGCCAGT
GTTGTGGTATGACAACGCTTCATCCGGTTGCTCAATGTGGTCATTGTTTGTCGCAACCGCCAGCTTGGCGGCAACTCTAT
TGTGTTGGTGACTACACGCCGCCATTGTCCGATTATGTTCAGCAATTAAAGTTTGCTCGTCAGCTGCATTATGTTGAGGT
ATTGGCCGATCTGCTTGCTCTAAAAATCCAACCAAATATTCAGATGATCACTTATGTACCCTTACACTGGCATCGGCAAT
TGTGGCGTGGATTTAATCAAAGTGAATTTCTAGCGCGAGCGTTGGCGCAGCGACTCGGTCTTCCTTGCCGAGCATTGTTT
AAGCGTACTCGTGCTACTCGTTCGCAACGGGGTATGGATCGCCTGCAACGACAACGTAATTTACGTGGCGCATTTACGCT
GACGAAAAGTGTTACTGAACTTCAATCCGTCGCGATTGTTGATGATGTAGTGACGACAGGGAGTACTGTGCAGCAATTAT
GCAAATTACTACTTGATGCTGGAGTTAAAAGTGTTGATATTTACTGTATCTGCCGTACTCCTGAATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

50.424

100

0.506
  comF Vibrio campbellii strain DS40M4

46.444

100

0.472

Multiple sequence alignment