NTDB

Overview

Name	xcpW	Type	Machinery gene
Locus tag	B7L36_RS15035	Genome accession	NZ_CP020586
Coordinates	2996094..2996795 (-)	Length	233 a.a.
NCBI ID	WP_000594589.1	Uniprot ID	-
Organism	Acinetobacter baumannii strain CBA7
Function	pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2991094..3001795

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
B7L36_RS15010 (B7L36_15015)	-	2991403..2991846 (-)	444	WP_001246675.1	SRPBCC family protein	-
B7L36_RS20555	tadA	2991916..2992419 (-)	504	WP_000033178.1	tRNA adenosine(34) deaminase TadA	-
B7L36_RS15015 (B7L36_15020)	-	2992426..2993547 (-)	1122	Protein_2822	enoyl-CoA hydratase/isomerase family protein	-
B7L36_RS15020 (B7L36_15025)	ung	2993544..2994257 (-)	714	WP_001177528.1	uracil-DNA glycosylase	-
B7L36_RS15025 (B7L36_15030)	-	2994308..2994904 (-)	597	WP_000908452.1	6-pyruvoyl trahydropterin synthase family protein	-
B7L36_RS15030 (B7L36_15035)	gspK	2995135..2996094 (-)	960	WP_000301476.1	type II secretion system minor pseudopilin GspK	-
B7L36_RS15035 (B7L36_15040)	xcpW	2996094..2996795 (-)	702	WP_000594589.1	type II secretion system minor pseudopilin GspJ	Machinery gene
B7L36_RS15040 (B7L36_15045)	xcpV	2996795..2997175 (-)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
B7L36_RS15045 (B7L36_15050)	-	2997165..2997719 (-)	555	WP_000841373.1	type II secretion system protein	-
B7L36_RS15050 (B7L36_15055)	-	2997729..2998337 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
B7L36_RS15055 (B7L36_15060)	-	2998375..2999148 (-)	774	WP_000497298.1	TatD family hydrolase	-
B7L36_RS15060 (B7L36_15065)	-	2999262..3000057 (+)	796	WP_076611834.1	IS5-like element ISAba15 family transposase	-
B7L36_RS15065 (B7L36_15070)	-	3000009..3000383 (-)	375	WP_083062525.1	PilZ domain-containing protein	-
B7L36_RS15070 (B7L36_15075)	-	3000395..3001375 (-)	981	WP_001075411.1	DNA polymerase III subunit delta'	-

Sequence

Protein

Download Length: 233 a.a. Molecular weight: 26639.58 Da Isoelectric Point: 9.3468

                                >NTDB_id=188067 B7L36_RS15035 WP_000594589.1 2996094..2996795(-) (xcpW) [Acinetobacter baumannii strain CBA7]

MIKNKYIHIRSIDSRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ

ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS

STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

Download Length: 702 bp

                                >NTDB_id=188067 B7L36_RS15035 WP_000594589.1 2996094..2996795(-) (xcpW) [Acinetobacter baumannii strain CBA7]

ATGATAAAAAATAAATATATTCACATCCGAAGCATTGATTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG

CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT

TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA

ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA

TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC

GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG

AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA

TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT

ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
xcpW	Acinetobacter baumannii D1279779	99.571	100	0.996

Detailed information NTG0188067