Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   vm_RS00955 Genome accession   NZ_CP016383
Coordinates   187335..188195 (-) Length   286 a.a.
NCBI ID   WP_070382535.1    Uniprot ID   -
Organism   Vibrio mimicus strain SCCF01     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 182335..193195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  vm_RS00925 (VM_00925) gspL 182614..183825 (+) 1212 WP_070381196.1 type II secretion system protein GspL -
  vm_RS00930 (VM_00930) - 183835..184332 (+) 498 WP_070381197.1 type II secretion system protein M -
  vm_RS00935 (VM_00935) - 184334..185092 (+) 759 WP_070381198.1 type II secretion system protein N -
  vm_RS00940 (VM_00940) cysQ 185133..185960 (-) 828 WP_070381199.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  vm_RS00945 (VM_00945) nudE 185983..186531 (-) 549 WP_000095822.1 ADP compounds hydrolase NudE -
  vm_RS00950 (VM_00950) nfuA 186659..187246 (-) 588 WP_000070175.1 Fe-S biogenesis protein NfuA -
  vm_RS00955 (VM_00955) comF 187335..188195 (-) 861 WP_070382535.1 ComF family protein Machinery gene
  vm_RS00960 (VM_00960) bioH 188131..188892 (+) 762 WP_070381200.1 pimeloyl-ACP methyl ester esterase BioH -
  vm_RS00965 (VM_00965) - 189136..189606 (+) 471 WP_070381201.1 ATP-dependent Lon protease -
  vm_RS00970 (VM_00970) - 189698..192019 (-) 2322 WP_070381202.1 Tex family protein -
  vm_RS20820 - 192389..192529 (+) 141 Protein_168 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32564.71 Da        Isoelectric Point: 8.7344

>NTDB_id=187667 vm_RS00955 WP_070382535.1 187335..188195(-) (comF) [Vibrio mimicus strain SCCF01]
MPQPCTNTRSCPCPLTCQYNAMVTVSPSISIFIRSANRQDEMSYPDSWLAMLTNWLRKTTAPLLIPECHLCRLALDKETP
FGVCTACQAWLEHGYRCARCGLPTLTAVEQCGQCLRQPPPWRKLICVGDYRFPLSDAVHQLKYQRQFWQAPRLAKLLVTR
ISEPAPLLCSVPLHWRRRWQRGFNQSDLLARELARSLPTQYDSQLFARRRATPHQQGLSKAQRIQNLSGAFVLNHQPNQQ
HIAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDSKG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=187667 vm_RS00955 WP_070382535.1 187335..188195(-) (comF) [Vibrio mimicus strain SCCF01]
ATGCCCCAGCCATGTACCAATACCAGATCTTGCCCTTGTCCACTGACTTGCCAATACAACGCCATGGTCACAGTTTCTCC
CTCTATTTCCATCTTCATCAGGTCTGCCAATCGGCAAGATGAGATGAGTTACCCTGATTCTTGGCTCGCTATGTTAACCA
ATTGGCTCAGAAAAACCACCGCACCACTGCTCATTCCTGAGTGCCATCTTTGTCGACTGGCTCTCGATAAAGAAACCCCG
TTTGGAGTCTGCACCGCCTGCCAAGCTTGGCTTGAACACGGTTATCGCTGTGCTCGCTGCGGTTTACCCACGCTCACGGC
TGTCGAGCAGTGCGGGCAGTGTCTGCGTCAGCCTCCGCCGTGGCGAAAACTGATTTGTGTCGGCGATTACCGCTTTCCAC
TCAGTGATGCGGTGCATCAACTCAAATACCAACGCCAGTTTTGGCAAGCACCACGTTTAGCTAAGTTACTCGTCACCCGG
ATTAGCGAGCCAGCCCCTTTGCTGTGCAGCGTGCCACTGCATTGGCGGCGACGCTGGCAACGCGGCTTTAATCAAAGCGA
TCTGCTGGCGCGCGAGTTAGCTCGCTCATTACCTACACAGTATGACAGCCAACTCTTTGCGCGCCGACGAGCCACACCGC
ACCAACAAGGACTCAGCAAAGCGCAGCGAATACAAAACTTGAGCGGTGCGTTTGTGCTGAATCATCAGCCAAACCAGCAA
CATATTGCGATTGTGGATGATGTTGTGACCACAGGCAGTACCATCCGACATTTATGCGATTTACTGCTTGATGTCGGCGT
ACAAAGCATTGATATTTACTGCATATGCCGCACTCCCGAGCCGAAAGATAGCAAAGGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(190-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

89.51

100

0.895
  comF Vibrio campbellii strain DS40M4

47.059

83.217

0.392

Multiple sequence alignment