Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   BA894_RS00830 Genome accession   NZ_CP016351
Coordinates   187960..188682 (-) Length   240 a.a.
NCBI ID   WP_065296128.1    Uniprot ID   -
Organism   Vibrio natriegens strain CCUG 16374     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 182960..193682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA894_RS00805 (BA894_00805) - 184138..184629 (+) 492 WP_065296126.1 type II secretion system protein M -
  BA894_RS00810 (BA894_00810) - 184631..185392 (+) 762 WP_065296127.1 type II secretion system protein N -
  BA894_RS00815 (BA894_00815) cysQ 185677..186504 (-) 828 WP_020335696.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  BA894_RS00820 (BA894_00820) nudE 186549..187118 (-) 570 WP_020335697.1 ADP compounds hydrolase NudE -
  BA894_RS00825 (BA894_00825) nfuA 187279..187863 (-) 585 WP_014230546.1 Fe-S biogenesis protein NfuA -
  BA894_RS00830 (BA894_00830) comF 187960..188682 (-) 723 WP_065296128.1 phosphoribosyltransferase family protein Machinery gene
  BA894_RS00835 (BA894_00835) bioH 188767..189534 (+) 768 WP_065297614.1 pimeloyl-ACP methyl ester esterase BioH -
  BA894_RS00840 (BA894_00840) - 189646..190110 (+) 465 WP_065296129.1 ATP-dependent Lon protease -
  BA894_RS00845 (BA894_00845) - 190187..192517 (-) 2331 WP_065296130.1 Tex family protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27624.88 Da        Isoelectric Point: 9.3881

>NTDB_id=187239 BA894_RS00830 WP_065296128.1 187960..188682(-) (comF) [Vibrio natriegens strain CCUG 16374]
MLSHHWQNIMHRVLGSQCGLCRLPLKKAQQPNALRWCSHCFQYLNPIRRCQHCGLAMQETERSDTVCGECLAEPPPWQRL
ITLGDYAFPLSREVQRFKDHGESWHVEALTRLLAARISSPATLITSVPLHWRRYLSRGFNQSDVLARHLAAHLHRHFDPK
VFRRIQYANSQRGHTKTQREQNLQGAFTLNKKPMYKHVAIVDDVVTTGSTVRQLCQLLLEVGVESIDIYCICRTPAPTSL

Nucleotide


Download         Length: 723 bp        

>NTDB_id=187239 BA894_RS00830 WP_065296128.1 187960..188682(-) (comF) [Vibrio natriegens strain CCUG 16374]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGCGTGCTCGGTAGTCAATGTGGTTTGTGCAGACTGCCACTGAAAAA
AGCACAACAGCCGAACGCTCTTCGTTGGTGTAGCCATTGTTTTCAGTATCTTAATCCGATTAGAAGGTGCCAACATTGCG
GTTTGGCTATGCAGGAAACAGAAAGGAGCGACACGGTGTGTGGCGAGTGCTTGGCCGAACCACCGCCCTGGCAGCGACTC
ATCACTCTCGGTGACTATGCGTTTCCTCTGTCACGCGAGGTTCAGCGCTTTAAGGATCATGGCGAGAGTTGGCACGTAGA
AGCATTAACGCGATTGCTTGCGGCGCGTATTTCTTCTCCAGCGACACTGATTACCAGCGTTCCACTACACTGGCGACGCT
ATTTATCGCGTGGATTCAATCAAAGTGATGTACTTGCCAGACACTTGGCAGCCCATCTGCATCGCCATTTTGACCCTAAA
GTATTTCGTCGTATCCAATACGCAAACTCTCAGAGAGGCCATACTAAAACCCAACGAGAGCAAAACTTGCAAGGTGCGTT
TACCCTCAATAAAAAGCCGATGTATAAACACGTGGCGATTGTCGATGATGTCGTCACAACGGGCAGTACGGTACGACAAT
TATGCCAATTACTACTTGAAGTTGGTGTAGAAAGCATCGATATTTACTGCATCTGCAGAACACCTGCTCCTACTTCGCTC
TAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

68.88

100

0.692
  comF Vibrio cholerae strain A1552

50.211

98.75

0.496

Multiple sequence alignment