Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   BA891_RS00720 Genome accession   NZ_CP016347
Coordinates   158318..159040 (-) Length   240 a.a.
NCBI ID   WP_065301830.1    Uniprot ID   -
Organism   Vibrio natriegens strain CCUG 16371     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 153318..164040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA891_RS00695 (BA891_00695) - 154496..154987 (+) 492 WP_041170184.1 type II secretion system protein M -
  BA891_RS00700 (BA891_00700) - 154989..155750 (+) 762 WP_024372765.1 type II secretion system protein N -
  BA891_RS00705 (BA891_00705) cysQ 156035..156862 (-) 828 WP_020335696.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  BA891_RS00710 (BA891_00710) nudE 156907..157476 (-) 570 WP_014230545.1 ADP compounds hydrolase NudE -
  BA891_RS00715 (BA891_00715) nfuA 157637..158221 (-) 585 WP_014230546.1 Fe-S biogenesis protein NfuA -
  BA891_RS00720 (BA891_00720) comF 158318..159040 (-) 723 WP_065301830.1 ComF family protein Machinery gene
  BA891_RS00725 (BA891_00725) bioH 159125..159892 (+) 768 WP_065301831.1 pimeloyl-ACP methyl ester esterase BioH -
  BA891_RS00730 (BA891_00730) - 160004..160468 (+) 465 WP_020335700.1 hypothetical protein -
  BA891_RS00735 (BA891_00735) - 160545..162875 (-) 2331 WP_065301832.1 Tex family protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27621.87 Da        Isoelectric Point: 8.8563

>NTDB_id=187147 BA891_RS00720 WP_065301830.1 158318..159040(-) (comF) [Vibrio natriegens strain CCUG 16371]
MLSHHWQNIMHRVLASQCGLCRLPLKTAQPPNALRWCSHCFQYLNPIRRCQHCGLAMQETERSDTVCGECLAEPPPWQRL
ITLGDYAFPLSREVQRFKDHGESWHIDALTQLLATRISSPATLITSVPLHWRRYLSRGFNQSDVLARYLAAHLHRHFDPK
VFRRIQYADSQRGHTKTQREQNLQGAFILNKKPMYKHVAIVDDVVTTGSTVRQLCQLLLEVGVESIDIYCICRTPAPTSL

Nucleotide


Download         Length: 723 bp        

>NTDB_id=187147 BA891_RS00720 WP_065301830.1 158318..159040(-) (comF) [Vibrio natriegens strain CCUG 16371]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGCGTGCTCGCTAGTCAATGTGGTTTGTGCAGGCTGCCACTGAAAAC
AGCACAACCGCCTAACGCTCTTCGTTGGTGTAGCCATTGTTTTCAGTATCTTAATCCGATTAGAAGGTGCCAACATTGCG
GTTTGGCTATGCAGGAAACAGAAAGGAGCGACACGGTGTGTGGCGAGTGCTTGGCCGAACCACCGCCCTGGCAGCGACTC
ATCACTCTCGGTGACTATGCGTTTCCTCTGTCACGCGAGGTTCAGCGCTTTAAAGATCATGGCGAGAGTTGGCACATCGA
CGCGCTGACTCAGTTGCTTGCCACTCGTATTTCTTCTCCAGCGACACTGATTACCAGCGTTCCACTGCACTGGCGACGCT
ATTTATCGCGTGGATTCAATCAAAGTGATGTACTTGCCAGATACTTGGCAGCCCATCTGCATCGCCATTTTGACCCTAAA
GTATTTCGTCGTATCCAATACGCAGACTCTCAGAGAGGCCATACTAAAACCCAACGAGAGCAAAACTTGCAAGGTGCGTT
TATCCTCAATAAAAAGCCGATGTATAAACACGTGGCGATTGTCGATGATGTCGTCACAACGGGCAGTACGGTAAGACAAT
TATGCCAATTACTACTTGAAGTTGGTGTAGAAAGCATCGATATTTACTGCATCTGCAGAACACCTGCTCCTACTTCGCTC
TAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(148-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

68.465

100

0.688
  comF Vibrio cholerae strain A1552

51.055

98.75

0.504

Multiple sequence alignment