Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   BBB50_RS21075 Genome accession   NZ_CP016324
Coordinates   187930..188790 (-) Length   286 a.a.
NCBI ID   WP_001895126.1    Uniprot ID   -
Organism   Vibrio cholerae 2740-80     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 182930..193790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBB50_RS00930 (BBB50_00930) gspL 183188..184399 (+) 1212 WP_001288749.1 type II secretion system protein GspL -
  BBB50_RS00935 (BBB50_00935) - 184409..184906 (+) 498 WP_000661343.1 type II secretion system protein M -
  BBB50_RS00940 (BBB50_00940) - 184908..185666 (+) 759 WP_000817139.1 type II secretion system protein N -
  BBB50_RS00945 (BBB50_00945) cysQ 185718..186545 (-) 828 WP_016710965.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  BBB50_RS00950 (BBB50_00950) nudE 186568..187116 (-) 549 WP_000095815.1 ADP compounds hydrolase NudE -
  BBB50_RS00955 (BBB50_00955) nfuA 187255..187842 (-) 588 WP_000070178.1 Fe-S biogenesis protein NfuA -
  BBB50_RS21075 comF 187930..188790 (-) 861 WP_001895126.1 ComF family protein Machinery gene
  BBB50_RS00965 (BBB50_00965) bioH 188726..189487 (+) 762 WP_001262152.1 pimeloyl-ACP methyl ester esterase BioH -
  BBB50_RS00970 (BBB50_00970) - 189650..190120 (+) 471 WP_000961393.1 hypothetical protein -
  BBB50_RS00975 (BBB50_00975) - 190215..192536 (-) 2322 WP_001895127.1 Tex family protein -
  BBB50_RS00980 (BBB50_00980) greB 192781..193266 (+) 486 WP_000850496.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32493.54 Da        Isoelectric Point: 8.1621

>NTDB_id=186949 BBB50_RS21075 WP_001895126.1 187930..188790(-) (comF) [Vibrio cholerae 2740-80]
MPQPCTNTRSCPCPLTCQYIAMVTVSPSISIFIHSANWQDEAHYPDSWLAMLTHWLRKTTAPLLTPECHLCRLALDTNSP
FGVCSACQAWLAHGYRCARCGLPTLTPVEQCGQCLGQPPPWRKLMCVGDYRFPLSDAVHQLKYQRQFWQAPRLAKLLATQ
INEPAPLLCSVPLHWRRRWLRGFNQSDLLARELANVLNIEYDYQLFARRRATPHQQGLSKAQRIHNLRDAFVLNHPPNQP
HVAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDSHG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=186949 BBB50_RS21075 WP_001895126.1 187930..188790(-) (comF) [Vibrio cholerae 2740-80]
ATGCCCCAGCCGTGTACCAATACCAGATCTTGCCCTTGTCCACTGACTTGCCAATACATCGCCATGGTCACAGTTTCTCC
GTCTATTTCCATCTTCATCCACTCTGCCAATTGGCAAGATGAAGCACATTACCCCGATTCTTGGCTCGCTATGTTAACCC
ATTGGCTCAGAAAAACTACCGCACCACTGCTGACTCCGGAATGTCATCTCTGCCGACTGGCACTCGATACAAATTCGCCG
TTTGGCGTCTGCTCTGCCTGCCAAGCTTGGCTTGCGCACGGTTATCGCTGCGCACGCTGCGGTTTACCGACTCTCACTCC
TGTTGAACAGTGCGGGCAGTGTTTGGGTCAGCCTCCGCCGTGGCGAAAACTGATGTGTGTCGGCGATTACCGCTTTCCAC
TTAGTGATGCGGTGCATCAACTCAAATACCAACGCCAGTTTTGGCAAGCGCCGCGCTTGGCTAAGCTACTCGCCACCCAG
ATTAACGAGCCAGCCCCTTTGCTGTGCAGTGTACCGCTGCATTGGCGGCGACGTTGGCTACGCGGCTTTAATCAAAGCGA
TCTGCTGGCGCGCGAGTTAGCCAATGTGCTGAACATTGAATATGACTACCAACTCTTTGCACGCCGCCGAGCCACACCGC
ATCAACAAGGACTCAGCAAGGCGCAGCGAATCCACAACCTACGCGATGCGTTTGTGCTGAATCATCCGCCAAACCAACCA
CATGTTGCGATTGTGGACGATGTGGTGACCACAGGCAGTACGATCCGACATTTATGCGATTTACTGCTTGATGTCGGTGT
GCAAAGCATTGATATTTACTGCATATGCCGCACTCCCGAGCCGAAAGATAGCCACGGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(189-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

97.552

100

0.976
  comF Vibrio campbellii strain DS40M4

46.639

83.217

0.388

Multiple sequence alignment