Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   FORC37_RS00605 Genome accession   NZ_CP016321
Coordinates   131115..131825 (-) Length   236 a.a.
NCBI ID   WP_052696725.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_037     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 126115..136825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC37_RS00575 (FORC37_0099) gspL 126309..127508 (+) 1200 WP_088427356.1 type II secretion system protein GspL -
  FORC37_RS00580 (FORC37_0100) - 127516..128007 (+) 492 WP_017789549.1 type II secretion system protein M -
  FORC37_RS00585 (FORC37_0101) - 128009..128770 (+) 762 WP_038964102.1 type II secretion system protein N -
  FORC37_RS00590 (FORC37_0102) cysQ 128888..129715 (-) 828 WP_017420493.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  FORC37_RS00595 (FORC37_0103) nudE 129730..130284 (-) 555 WP_011078932.1 ADP compounds hydrolase NudE -
  FORC37_RS00600 (FORC37_0104) nfuA 130400..130984 (-) 585 WP_026050270.1 Fe-S biogenesis protein NfuA -
  FORC37_RS00605 (FORC37_0105) comF 131115..131825 (-) 711 WP_052696725.1 ComF family protein Machinery gene
  FORC37_RS00610 (FORC37_0106) bioH 131914..132681 (+) 768 WP_045609416.1 pimeloyl-ACP methyl ester esterase BioH -
  FORC37_RS00615 (FORC37_0107) - 132819..133289 (+) 471 WP_011078928.1 hypothetical protein -
  FORC37_RS00620 (FORC37_0108) ltrA 133916..135208 (+) 1293 WP_198300269.1 group II intron reverse transcriptase/maturase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27304.07 Da        Isoelectric Point: 9.6760

>NTDB_id=186864 FORC37_RS00605 WP_052696725.1 131115..131825(-) (comF) [Vibrio vulnificus strain FORC_037]
MLTDWLSEKILRSLPRLCHLCGLPMNHDHHPLWCRHCLTLFDAEPRCQRCGLPTLTVVPQCGQCLKSPPPWQRLYCLTPY
RFPASHYVNQIKHQRKFWYCASLAPLLIQRIDHPAPLLLSVPMHWRRQWQRGFNQSDVLAAQLARRLNRPFLAHAFTRLL
HTPPQQGLNKQQRQRNLAGAFRLNRSALPHAIPKHIAIVDDVVTTGCTVRQLCQLLLAVGVESIDIYCLCRTPEKD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=186864 FORC37_RS00605 WP_052696725.1 131115..131825(-) (comF) [Vibrio vulnificus strain FORC_037]
ATGTTAACCGATTGGCTTAGTGAAAAAATACTCCGATCTCTTCCTCGCCTCTGTCATCTGTGCGGCTTGCCGATGAATCA
CGACCACCACCCGCTCTGGTGCCGGCACTGCCTAACCCTGTTCGATGCCGAACCGCGTTGCCAACGTTGCGGGCTGCCGA
CGTTAACGGTTGTCCCCCAATGCGGCCAATGTCTGAAATCTCCGCCCCCTTGGCAAAGGCTTTACTGCCTCACGCCGTAT
CGCTTCCCGGCCTCACACTACGTCAATCAAATCAAACATCAGCGCAAGTTCTGGTACTGTGCCAGCTTGGCACCTTTACT
CATCCAACGCATTGACCACCCCGCTCCACTGCTGCTCTCGGTGCCGATGCATTGGCGTCGGCAATGGCAGCGAGGCTTCA
ATCAAAGCGATGTGTTGGCCGCGCAACTGGCCCGTAGATTAAATCGCCCATTCCTTGCTCACGCTTTTACTCGTTTGTTG
CACACTCCGCCACAGCAAGGGCTCAATAAACAGCAGCGTCAGCGCAATTTAGCTGGTGCTTTTCGCCTCAATCGCTCAGC
GCTGCCCCATGCGATTCCCAAGCATATCGCGATTGTCGATGATGTGGTCACGACGGGCTGTACGGTACGACAATTATGTC
AATTACTGCTTGCAGTCGGCGTGGAAAGCATTGATATTTATTGCCTCTGCCGAACTCCCGAGAAGGATTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(138-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

55.983

99.153

0.555
  comF Vibrio campbellii strain DS40M4

45.833

100

0.466

Multiple sequence alignment