Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   B4V05_RS06065 Genome accession   NZ_CP020459
Coordinates   1185124..1185837 (+) Length   237 a.a.
NCBI ID   WP_016265311.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain FAM18311     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1180124..1190837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4V05_RS06045 (B4V05_06035) - 1180496..1181296 (-) 801 WP_011374895.1 ChbG/HpnK family deacetylase -
  B4V05_RS06050 (B4V05_06040) - 1181305..1181796 (-) 492 WP_016265308.1 PTS sugar transporter subunit IIA -
  B4V05_RS06055 (B4V05_06045) - 1181810..1183459 (-) 1650 WP_011374897.1 alpha,alpha-phosphotrehalase -
  B4V05_RS06060 (B4V05_06050) - 1183473..1184951 (-) 1479 WP_076632371.1 PTS transporter subunit EIIC -
  B4V05_RS06065 (B4V05_06055) treR 1185124..1185837 (+) 714 WP_016265311.1 trehalose operon repressor Regulator
  B4V05_RS06070 (B4V05_06060) - 1185901..1186338 (-) 438 WP_056948751.1 hypothetical protein -
  B4V05_RS06075 (B4V05_06065) - 1186443..1188989 (-) 2547 WP_076632372.1 YfhO family protein -
  B4V05_RS06080 (B4V05_06070) - 1189155..1190021 (-) 867 WP_056948755.1 GRP family sugar transporter -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 26798.60 Da        Isoelectric Point: 6.5879

>NTDB_id=186864 B4V05_RS06065 WP_016265311.1 1185124..1185837(+) (treR) [Latilactobacillus sakei strain FAM18311]
MSKKYEIIYRELVHKITNHVYPANSFLPSENELATAYGTSRETVRKALASLLENGFIHKIKGKGSLVLDFDKYAFPISGL
TSYRELDSLFEMHTQTTVLQLQKATVPQAPFHLDPTEILPATYIQRLRTVDGEPIVIDNDYVLTSVVPEISRAVAQDSLY
HYFEQELGLTIGYGNKEFTVIPATEEQCAILKLAPNSAVVSVKGITHLQDNTLIQFTESIHRADKFKFIEHARRQSI

Nucleotide


Download         Length: 714 bp        

>NTDB_id=186864 B4V05_RS06065 WP_016265311.1 1185124..1185837(+) (treR) [Latilactobacillus sakei strain FAM18311]
ATGTCGAAAAAATATGAAATAATCTACCGCGAACTCGTCCATAAAATTACGAACCATGTTTATCCAGCCAACTCATTCTT
ACCCAGCGAAAACGAACTCGCAACAGCGTATGGTACCTCACGCGAAACAGTCCGCAAAGCACTCGCTAGCCTTTTAGAAA
ATGGCTTCATTCATAAGATCAAAGGCAAAGGCTCTTTAGTCCTTGATTTTGATAAATACGCCTTTCCCATTTCCGGCTTG
ACCAGTTACCGCGAATTGGATAGTCTCTTTGAAATGCACACGCAAACAACAGTCCTACAACTCCAAAAAGCAACCGTCCC
ACAAGCGCCTTTTCATTTAGACCCCACAGAGATTCTACCCGCGACCTATATTCAACGGTTACGGACCGTTGATGGTGAAC
CAATTGTTATCGATAACGACTACGTTCTAACCAGTGTTGTCCCAGAAATCTCACGGGCAGTCGCTCAGGATTCACTTTAT
CACTACTTTGAACAAGAATTGGGTCTAACTATTGGTTATGGGAATAAAGAATTCACTGTTATCCCTGCAACCGAAGAACA
GTGTGCCATTTTAAAACTCGCCCCTAATAGTGCGGTCGTTAGTGTTAAAGGTATCACTCATCTTCAGGATAATACCTTAA
TTCAATTTACCGAATCCATTCACCGGGCTGATAAATTTAAGTTTATTGAACACGCGCGCCGCCAATCAATTTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(5-67)

UTRA domain (UTRA)

(120-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

37.339

98.312

0.367

Multiple sequence alignment