Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   B4V05_RS05450 Genome accession   NZ_CP020459
Coordinates   1078788..1080551 (-) Length   587 a.a.
NCBI ID   WP_076632425.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain FAM18311     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1073788..1085551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4V05_RS05430 (B4V05_05420) - 1074585..1075562 (-) 978 WP_076632423.1 alpha-ketoacid dehydrogenase subunit beta -
  B4V05_RS05435 (B4V05_05425) pdhA 1075564..1076673 (-) 1110 WP_056946690.1 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha -
  B4V05_RS05440 (B4V05_05430) - 1076996..1077679 (-) 684 WP_076632424.1 hypothetical protein -
  B4V05_RS05445 (B4V05_05435) def 1078182..1078739 (+) 558 WP_011374787.1 peptide deformylase -
  B4V05_RS05450 (B4V05_05440) rcrQ 1078788..1080551 (-) 1764 WP_076632425.1 ABC transporter ATP-binding protein Regulator
  B4V05_RS05455 (B4V05_05445) rcrP 1080538..1082277 (-) 1740 WP_056946696.1 ABC transporter ATP-binding protein Regulator
  B4V05_RS05460 (B4V05_05450) - 1082305..1082790 (-) 486 WP_011374790.1 hypothetical protein -
  B4V05_RS05465 (B4V05_05455) - 1082987..1083199 (+) 213 WP_011374791.1 DNA-directed RNA polymerase subunit epsilon -
  B4V05_RS05470 (B4V05_05460) rnjA 1083204..1084892 (+) 1689 WP_011374792.1 ribonuclease J1 -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 65090.61 Da        Isoelectric Point: 6.2494

>NTDB_id=186859 B4V05_RS05450 WP_076632425.1 1078788..1080551(-) (rcrQ) [Latilactobacillus sakei strain FAM18311]
MKNIKVLKRLMRYIGPYKITFWSAITATVISVLANALWPFIMGLAVTEISQNLAQHVAVNFSYITKVIAMILSFALLYQT
MMFLGSFLMTRAVQHAMRDLRRDINLQMNALPVRFFDSQQQGNILSRVTNDVDAITNALQQSLIQVVTSILGIIMAVVMM
LTINLWMALLSLIMIPTSLLISKAIIKKSQVYFQGQQNTLGEMNGYVQENYGGFSVLKLYGQEERAVDEFAAITDRLTEF
GFKAAFISGIMMPLVGLTTNLTYAGMATLGGYYVLHGVITVGNLQAFIQYIWQINQPISQITQLSGVMQAAAAATQRVFE
ILDEPIEPTDQETAELSADVQGKVEFKDVSFSYDPAKPLIRDLSFTANPGDKIAIVGPTGAGKTTMINLLMRFYDVSSGQ
ILIDGVDTRQLSKQTVRSLFGMVLQDAWLYHTTITENIRFGKLDATEYEVVDAAKTANVDHFIHTLPNGYQMTIDEEADN
VSLGQKQLLTIARAVIANPKILILDEATSSVDTRLESLLQKAMEKVMQGRTSFVIAHRLSTIRDANLILVMDHGQIVEKG
THDDLLAANGVYAKLYNSQFAEAKLNA

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=186859 B4V05_RS05450 WP_076632425.1 1078788..1080551(-) (rcrQ) [Latilactobacillus sakei strain FAM18311]
ATGAAGAATATTAAGGTGCTCAAACGCCTGATGCGCTATATTGGGCCGTATAAAATAACGTTCTGGTCAGCAATTACTGC
AACGGTGATTTCCGTTTTAGCGAATGCGCTATGGCCATTTATCATGGGACTAGCAGTGACTGAAATTAGTCAAAACTTAG
CGCAACACGTCGCCGTTAACTTTAGTTACATTACTAAAGTGATTGCGATGATTCTCAGCTTTGCATTACTTTATCAAACG
ATGATGTTTCTGGGATCGTTTTTAATGACGCGTGCCGTCCAACACGCAATGCGTGATTTACGGCGGGATATCAATCTACA
GATGAACGCTTTGCCAGTCCGTTTCTTTGATTCACAACAACAAGGCAATATCTTGTCGCGGGTTACTAATGATGTTGATG
CAATTACCAATGCCTTGCAACAGAGTTTAATCCAAGTGGTGACCTCAATTTTGGGGATCATCATGGCGGTTGTCATGATG
TTGACGATTAATTTATGGATGGCATTACTATCCTTAATTATGATTCCGACCTCACTTTTGATTTCTAAAGCAATCATCAA
AAAGTCACAAGTTTACTTCCAAGGGCAACAAAATACCTTGGGTGAGATGAACGGCTATGTTCAAGAAAACTATGGTGGCT
TCAGTGTCTTGAAGTTGTATGGTCAAGAAGAACGAGCAGTTGATGAATTTGCAGCGATTACGGATCGATTGACTGAATTT
GGCTTCAAAGCGGCCTTTATTTCAGGGATTATGATGCCATTAGTGGGTTTGACGACTAACTTGACTTACGCTGGGATGGC
AACCTTGGGTGGTTACTATGTCTTGCACGGTGTCATTACGGTTGGTAACTTGCAGGCCTTTATTCAATATATTTGGCAGA
TTAATCAACCGATTTCGCAAATCACACAATTATCCGGTGTGATGCAAGCCGCTGCCGCTGCGACACAACGAGTTTTTGAA
ATCTTAGATGAACCGATTGAACCAACTGATCAAGAAACGGCTGAATTATCGGCTGATGTTCAGGGGAAAGTTGAATTTAA
AGATGTCAGCTTTAGCTATGATCCAGCCAAACCGTTGATTCGTGATTTAAGTTTCACTGCTAATCCGGGCGATAAAATTG
CGATTGTTGGGCCAACTGGGGCCGGGAAAACGACGATGATTAATTTATTAATGCGTTTTTACGATGTCAGTTCTGGTCAA
ATCCTGATTGATGGCGTCGATACCCGCCAATTGAGTAAACAGACAGTTCGCTCACTCTTTGGGATGGTGCTGCAGGATGC
TTGGTTGTACCACACAACGATTACGGAAAATATTCGTTTTGGGAAGCTAGATGCCACTGAATATGAAGTCGTGGATGCTG
CCAAAACGGCTAATGTTGATCACTTTATCCATACATTGCCAAATGGCTATCAGATGACAATTGATGAAGAAGCGGATAAC
GTGTCGTTAGGACAAAAGCAACTCTTAACGATTGCTCGGGCAGTGATTGCTAATCCTAAAATTTTGATTTTAGATGAAGC
AACCAGTTCAGTCGATACGCGCTTAGAAAGCTTATTACAAAAGGCGATGGAAAAAGTGATGCAAGGACGAACAAGCTTTG
TGATTGCCCATCGCTTATCAACAATTCGGGATGCTAACTTAATTTTAGTGATGGATCACGGTCAAATTGTTGAAAAAGGA
ACGCATGATGACTTATTAGCCGCTAATGGTGTTTATGCTAAGCTTTATAACAGTCAATTTGCAGAAGCAAAATTAAATGC
ATAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(361-509)

ABC transporter transmembrane region (ABC_membrane)

(24-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

42.857

100

0.429