Detailed information NTG0186842

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: B4V05_RS04035
• Genome accession: NZ_CP020459
• Coordinates: 783814..786342 (+)
• Length: 842 a.a.
• NCBI ID: WP_056948399.1
• Uniprot ID: -
• Organism: Latilactobacillus sakei strain FAM18311
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 778814..791342

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
B4V05_RS04015 (B4V05_04005)	-	779456..780754 (+)	1299	WP_056948397.1	pyrimidine-nucleoside phosphorylase	-
B4V05_RS04020 (B4V05_04010)	-	780991..782325 (+)	1335	WP_025015827.1	FAD-dependent oxidoreductase	-
B4V05_RS04025 (B4V05_04015)	-	782478..783137 (+)	660	WP_011374509.1	histidine phosphatase family protein	-
B4V05_RS04030 (B4V05_04020)	-	783149..783808 (+)	660	WP_011374510.1	tetratricopeptide repeat protein	-
B4V05_RS04035 (B4V05_04025)	recD/recD2/recDB	783814..786342 (+)	2529	WP_056948399.1	ATP-dependent RecD-like DNA helicase	Machinery gene
B4V05_RS04040 (B4V05_04030)	-	786385..787596 (+)	1212	WP_089535068.1	GNAT family N-acetyltransferase	-
B4V05_RS04045 (B4V05_04035)	-	787657..787896 (-)	240	WP_011374513.1	hypothetical protein	-
B4V05_RS04050 (B4V05_04040)	-	788162..788773 (+)	612	WP_056948489.1	LysE/ArgO family amino acid transporter	-
B4V05_RS04055 (B4V05_04045)	-	788864..789964 (+)	1101	WP_076631885.1	DNA alkylation repair protein	-
B4V05_RS04060 (B4V05_04050)	-	790158..790874 (+)	717	WP_076631884.1	MerR family transcriptional regulator	-

Sequence

Protein

• Length: 842 a.a.
• Molecular weight: 93343.54 Da
• Isoelectric Point: 5.0770

>NTDB_id=186842 B4V05_RS04035 WP_056948399.1 783814..786342(+) (recD/recD2/recDB) [Latilactobacillus sakei strain FAM18311]
MAILETENTVDNKPTVTGTVQSVFYENPGNFFKILLIKIAHKTIDWHEPEIVVTGSFGEIKEDERYTFYGKVITHPKYGQ
QFQADNYQVDQPTTKTGLVAYLSGEKFAGIGQKTAEKIVDTLGLDAIDKILADSTVLAPLGLNDKKQATLVETLTINNGM
EQIIIGLNNYGFGSSMAYNIYQTYHEDTLKIIQENPYQLVADIAGIGFKRADNLAEKIGFAADSPARIQGALMQALNELT
NQAGDTFTQAKPLLAASIQLMEQARNVAIDPNLVAEQLMVLAHDGKVVGDENRIYPNGLYNAEWQIANHLMRIENERDKI
SYPKHDLDKEIRRLEKRFKMSYDDVQKNAIKLAMTHRAFLLTGGPGTGKTTIINGIVTLFAELNGLSLDINEYKDTPFPI
LLAAPTGRAAKRMSETTGLPASTIHRLLGITGRENNPDIDSKELEGGLLIVDEMSMVDTYLFRSLIRAVPSNMQVVFVGD
KDQLPSVGAGQVFFDLLQSQAIPAIELQQIYRQDDESTIIPLAHEINQGQLPADLLQPQKDRSFIQCSPYQIESVIKQVV
TKAKDRGFETKDIQVLAPMYRGAAGIDQLNPMIQNIMNPKVDDRKKQVSLGNVHYRIGDKILHLVNSPELNVFNGEIGQI
TGITYAKDSDDKMDELTIAFDSTEITYKRTEWHKITLAYCTSIHKAQGSEFEMVILPLVNQYQRMLKRNLLYTAVTRARS
LLILIGEPSAFDKAAKELSANRQTTLKERIISVFNGEKVSQAVKTASVGLTEAKPTVEKLTPAKAAAPEQLALVDDADDS
EETIQEAPANYELTPALVSGHQIDPMIGMADLTPYTFMTSAK

Nucleotide

• Length: 2529 bp

>NTDB_id=186842 B4V05_RS04035 WP_056948399.1 783814..786342(+) (recD/recD2/recDB) [Latilactobacillus sakei strain FAM18311]
ATGGCGATTTTGGAAACAGAAAATACGGTCGATAATAAACCAACCGTTACCGGAACGGTCCAAAGTGTTTTTTACGAGAA
TCCCGGTAACTTTTTTAAGATTCTCTTGATTAAAATTGCCCATAAGACAATCGATTGGCACGAGCCAGAGATTGTCGTGA
CTGGTAGTTTTGGTGAGATTAAAGAAGACGAACGCTATACGTTTTATGGCAAAGTCATCACCCATCCTAAATACGGTCAA
CAATTTCAAGCTGACAACTATCAGGTTGACCAACCGACGACTAAGACTGGCTTAGTCGCCTATTTATCTGGCGAAAAATT
TGCCGGCATTGGTCAAAAAACGGCTGAGAAAATTGTCGATACCTTAGGATTAGATGCGATTGATAAGATCTTAGCGGACT
CAACTGTTTTAGCGCCGCTGGGTTTAAATGATAAGAAACAAGCGACGTTGGTTGAAACGCTGACGATTAACAATGGCATG
GAACAAATTATCATTGGTCTCAATAATTACGGTTTTGGGAGCTCGATGGCCTATAACATCTACCAAACTTATCACGAAGA
TACCTTGAAGATTATTCAAGAAAATCCTTATCAACTAGTGGCCGACATTGCCGGTATTGGGTTTAAACGAGCGGATAATT
TAGCTGAGAAGATTGGGTTTGCAGCCGATTCACCAGCGCGGATTCAAGGGGCGCTGATGCAAGCCTTGAACGAACTGACC
AATCAGGCCGGCGATACGTTTACCCAGGCGAAGCCGTTATTAGCAGCCAGCATTCAATTGATGGAACAGGCCCGGAACGT
GGCGATTGATCCGAATTTAGTGGCAGAGCAATTAATGGTCTTGGCACACGATGGCAAAGTCGTTGGTGATGAAAATCGGA
TTTATCCGAATGGTTTGTACAACGCGGAATGGCAAATTGCCAACCACTTGATGCGGATTGAAAATGAACGGGATAAAATT
AGTTATCCTAAACATGATCTGGATAAAGAAATTCGCCGGCTCGAAAAACGCTTTAAGATGAGCTATGATGATGTCCAAAA
AAATGCAATTAAATTAGCGATGACTCACAGAGCCTTTCTACTAACAGGGGGCCCTGGTACTGGGAAAACAACGATTATTA
ATGGGATTGTGACTTTATTTGCTGAGTTAAACGGTCTTTCGCTTGATATCAACGAATATAAAGACACACCATTCCCAATT
TTATTGGCAGCGCCTACTGGGCGGGCCGCTAAACGGATGAGCGAAACAACTGGCTTGCCAGCTAGCACGATTCATCGCTT
ATTAGGAATTACGGGACGTGAAAATAATCCTGATATCGATAGTAAGGAACTAGAAGGCGGCTTATTAATTGTCGATGAAA
TGTCGATGGTTGATACGTACCTCTTTAGATCATTGATTCGAGCAGTGCCTAGCAATATGCAAGTCGTCTTTGTTGGTGAT
AAAGATCAGTTGCCATCAGTTGGCGCGGGGCAAGTCTTTTTTGATTTACTGCAGAGTCAGGCAATTCCGGCAATCGAACT
GCAACAAATCTATCGACAAGACGATGAGTCGACGATTATTCCGCTAGCTCATGAGATTAATCAGGGCCAACTACCAGCCG
ATCTACTCCAACCGCAAAAGGATCGGAGCTTTATTCAGTGCAGTCCTTATCAGATTGAATCGGTGATTAAGCAAGTGGTC
ACTAAAGCAAAAGACCGGGGCTTTGAAACAAAAGACATTCAGGTGCTAGCACCGATGTATCGGGGCGCAGCCGGAATTGA
TCAATTAAATCCAATGATTCAAAATATCATGAATCCAAAGGTCGATGATCGTAAGAAACAAGTCAGTTTAGGTAACGTTC
ATTATCGGATTGGCGATAAGATTTTACATCTGGTTAATAGTCCGGAACTAAACGTTTTTAACGGTGAAATCGGGCAAATA
ACCGGGATTACGTATGCTAAAGATAGTGATGACAAGATGGACGAGTTAACGATTGCCTTTGATAGTACCGAAATTACCTA
TAAACGGACGGAATGGCATAAAATTACGTTGGCGTATTGTACGTCGATTCATAAGGCTCAAGGTTCTGAATTTGAAATGG
TAATTCTACCCTTGGTTAACCAATATCAACGGATGCTGAAACGAAACTTGTTGTATACAGCAGTGACACGGGCGCGGTCC
TTACTGATTTTAATTGGGGAACCAAGTGCTTTTGATAAGGCGGCCAAGGAACTCTCCGCAAATCGGCAAACAACGCTTAA
GGAACGGATTATCAGCGTCTTTAATGGCGAAAAAGTGAGCCAAGCGGTCAAAACCGCTAGTGTTGGCTTAACGGAAGCTA
AACCAACTGTTGAAAAACTAACCCCGGCTAAAGCAGCAGCGCCAGAACAATTGGCATTAGTGGACGATGCAGATGACAGC
GAAGAAACAATTCAAGAAGCACCTGCTAATTATGAATTAACACCAGCCTTGGTGAGTGGTCATCAGATTGACCCGATGAT
TGGGATGGCGGATTTAACGCCGTACACATTCATGACAAGTGCTAAGTAG

Domains

Predicted by InterProScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (589-660)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (678-725)

• AAA domain (AAA_30) (342-547)

• Helix-hairpin-helix containing domain (HHH_RecD2) (157-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	46.933	89.074	0.418