Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   A6J87_RS07115 Genome accession   NZ_CP020451
Coordinates   1379525..1380310 (+) Length   261 a.a.
NCBI ID   WP_002884784.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_259     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1374525..1385310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J87_RS07090 (A6J87_07060) - 1374603..1375337 (+) 735 WP_060971644.1 LPXTG cell wall anchor domain-containing protein -
  A6J87_RS07095 (A6J87_07065) pflA 1375524..1376324 (+) 801 WP_002891689.1 pyruvate formate-lyase-activating protein -
  A6J87_RS07100 (A6J87_07070) - 1376394..1377146 (+) 753 WP_004183318.1 hypothetical protein -
  A6J87_RS07105 (A6J87_07075) - 1377226..1377678 (-) 453 WP_002884397.1 universal stress protein -
  A6J87_RS07110 (A6J87_07080) - 1378042..1379256 (+) 1215 WP_004183315.1 pyridoxal phosphate-dependent aminotransferase -
  A6J87_RS07115 (A6J87_07085) codY 1379525..1380310 (+) 786 WP_002884784.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  A6J87_RS07120 (A6J87_07090) - 1380376..1380927 (+) 552 WP_080611829.1 cysteine hydrolase family protein -
  A6J87_RS07125 (A6J87_07095) - 1381119..1382558 (+) 1440 WP_060972570.1 6-phospho-beta-glucosidase -
  A6J87_RS07130 (A6J87_07100) - 1382777..1383985 (+) 1209 WP_080611830.1 glycosyltransferase -
  A6J87_RS07135 (A6J87_07105) - 1383989..1384870 (+) 882 WP_080611831.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28829.85 Da        Isoelectric Point: 4.3715

>NTDB_id=186778 A6J87_RS07115 WP_002884784.1 1379525..1380310(+) (codY) [Streptococcus salivarius strain FDAARGOS_259]
MANLLAKTRKITSILQRSVDSLEGDLPYNNMAAQLADIIDCNAAIVNGGGALLGFAMKYKTNNDRVEEFFEAKQLPEEYT
RGISRVYDTQENIGIDSDLTIFPVESKDDFPDGLTTIAPIYGGGMRLGSFIIWRNDHDFVDEDLILVEIASTVVGLQLLN
LQTENLEETIRKQTAINMAINTLSYSEIKAVSAILNELDGLEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLNEGIYDKLKEYE

Nucleotide


Download         Length: 786 bp        

>NTDB_id=186778 A6J87_RS07115 WP_002884784.1 1379525..1380310(+) (codY) [Streptococcus salivarius strain FDAARGOS_259]
ATGGCAAATTTGCTGGCTAAAACACGTAAAATTACATCTATCTTGCAACGCTCAGTAGACAGCTTGGAAGGAGATCTTCC
ATACAACAACATGGCTGCTCAATTGGCGGATATCATTGATTGTAACGCTGCTATCGTTAATGGTGGTGGTGCTCTCCTTG
GTTTTGCCATGAAGTACAAAACCAACAATGATCGTGTGGAAGAGTTTTTTGAAGCTAAACAACTTCCAGAAGAATATACA
CGTGGTATCAGCCGTGTTTATGATACTCAAGAAAACATTGGTATTGACAGTGACTTGACCATTTTCCCAGTGGAGTCAAA
AGATGACTTCCCAGATGGTTTGACTACAATTGCCCCTATCTATGGTGGTGGTATGCGTCTTGGTTCTTTCATCATTTGGC
GTAACGATCATGATTTTGTGGATGAAGATCTTATCTTGGTTGAGATTGCCTCTACGGTAGTTGGGTTGCAGTTGCTGAAC
CTTCAAACAGAGAACTTGGAAGAAACAATTCGTAAACAAACAGCTATTAACATGGCTATTAATACCTTGTCTTACTCAGA
AATCAAGGCAGTTTCAGCTATCTTGAACGAGTTGGACGGTTTGGAAGGTCGCTTGACAGCATCTGTTATTGCTGATCGTA
TCGGAATTACGCGTTCAGTTATCGTTAATGCCCTTCGTAAGTTGGAATCAGCTGGTATTATTGAGAGTCGTTCACTCGGT
ATGAAAGGGACTTATCTTAAAGTCCTTAACGAAGGTATCTACGACAAATTGAAAGAATACGAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(201-261)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

64.981

98.467

0.64
  codY Bacillus subtilis subsp. subtilis str. 168

53.036

94.636

0.502