Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   A6J85_RS08180 Genome accession   NZ_CP020450
Coordinates   1640662..1642398 (+) Length   578 a.a.
NCBI ID   WP_061595915.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS_257     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1635662..1647398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J85_RS08160 (A6J85_08070) - 1635754..1636119 (+) 366 WP_061595919.1 VOC family protein -
  A6J85_RS08165 (A6J85_08075) asnS 1636141..1637487 (+) 1347 WP_061595918.1 asparagine--tRNA ligase -
  A6J85_RS08170 (A6J85_08080) - 1637646..1638833 (+) 1188 WP_061595917.1 MFS transporter -
  A6J85_RS08175 (A6J85_08085) - 1638930..1640672 (+) 1743 WP_082307599.1 ABC transporter ATP-binding protein -
  A6J85_RS08180 (A6J85_08090) rcrQ 1640662..1642398 (+) 1737 WP_061595915.1 ABC transporter ATP-binding protein Regulator
  A6J85_RS08185 (A6J85_08095) - 1642518..1643105 (-) 588 WP_061595914.1 DUF4097 family beta strand repeat-containing protein -
  A6J85_RS08190 (A6J85_08100) - 1643092..1644495 (-) 1404 WP_061595913.1 MFS transporter -
  A6J85_RS08195 (A6J85_08105) - 1644686..1645321 (+) 636 WP_046165477.1 TetR/AcrR family transcriptional regulator -
  A6J85_RS08200 (A6J85_08110) - 1645654..1646382 (+) 729 WP_061595912.1 TraX family protein -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 64430.31 Da        Isoelectric Point: 6.3494

>NTDB_id=186673 A6J85_RS08180 WP_061595915.1 1640662..1642398(+) (rcrQ) [Streptococcus gordonii strain FDAARGOS_257]
MKHKTSPSSLRRLTRDLLQARWLFLLASLGTVAQVALTVLLPVLIGNAVDSVLLPQADQHLVPILGQMLLVILANTLIQW
LNPLLYNQLVYRYSQQLRQGVIKKVHYLPLAYLDRQGTGDLVSRVTTDLEQLSNGLLMVFNQFFVGLLTILVTIISMAQL
DFFLLLLVLLLTPLSLFLARFIARKSFSFFQRQTQARGAQTQLIEESLTQESLIQAFNAQEQFDTAFTRSNQIYADYSQA
AIFYSSTVNPSTRFINALIYALIVGFGAVRIIQGTGFTVGQLVTFLNYVNQYTKPFNDISSVMSELQSALACAERIYSVL
DQEEIAESGQEILQSEDVKGQISFEHVAFGYDPGKELIQDLNIRIPAASKVAIVGPTGAGKSTLINLLMRFYNVDSGLIS
LDDVPISHYTRASYRQQFGMVLQETWLKTATIHNNIAFGRPDASREEVIAAAKAANAHFFIQQLPQGYDTYLADAGDSLS
QGQRQLLTIARVFLSVPKILILDEATSSIDTRTEVLIQEAFSKLMVGRTSFIIAHRLSTIQNADIILVMVDGNIVEHGNH
QELMAARGVYYQMQTAQE

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=186673 A6J85_RS08180 WP_061595915.1 1640662..1642398(+) (rcrQ) [Streptococcus gordonii strain FDAARGOS_257]
ATGAAGCATAAGACATCACCTAGCAGCTTGAGGCGTTTGACTCGAGACTTGCTGCAGGCGCGCTGGCTCTTTCTCCTAGC
TAGTCTGGGAACGGTGGCTCAAGTGGCTCTGACTGTTCTTCTTCCAGTTTTAATCGGAAATGCGGTTGATAGTGTTCTTC
TTCCTCAAGCGGACCAGCATTTGGTGCCGATTTTGGGCCAGATGTTGTTAGTCATCTTAGCCAATACGCTGATTCAGTGG
CTCAATCCCTTGCTCTATAATCAGCTGGTCTATCGCTATAGCCAGCAACTCCGGCAAGGTGTTATCAAGAAAGTTCATTA
TCTGCCTTTGGCTTATCTGGACCGGCAGGGAACAGGTGATTTGGTTAGTCGGGTGACGACTGATTTGGAGCAGCTCAGCA
ATGGTTTGCTTATGGTTTTTAATCAGTTTTTTGTGGGTTTGCTAACAATTTTAGTGACCATAATTAGTATGGCTCAGTTG
GACTTTTTCCTCTTGCTTTTGGTTCTGCTTTTGACGCCCCTTTCTCTCTTCTTAGCTCGCTTTATTGCCAGAAAGAGTTT
TAGCTTTTTCCAACGACAGACACAGGCGAGGGGAGCACAGACCCAGCTGATTGAGGAAAGTTTGACTCAAGAAAGTCTGA
TCCAGGCCTTTAATGCTCAGGAGCAGTTTGATACAGCTTTTACCCGCAGTAATCAAATCTATGCAGACTATTCGCAGGCG
GCTATTTTCTATTCATCAACAGTCAATCCTTCGACTCGTTTTATCAATGCCCTGATCTATGCTTTGATTGTAGGCTTTGG
GGCTGTCCGAATCATTCAGGGAACAGGTTTTACGGTTGGGCAGCTGGTAACTTTTCTCAACTATGTCAACCAGTACACCA
AGCCTTTCAATGATATTTCGTCTGTCATGTCAGAATTGCAGAGCGCTTTAGCTTGTGCAGAGCGAATTTACAGCGTTTTG
GACCAAGAAGAAATAGCAGAGTCTGGTCAGGAAATCCTCCAGTCTGAAGATGTCAAAGGACAGATTAGCTTTGAGCATGT
GGCTTTTGGCTATGACCCTGGCAAAGAGCTGATTCAGGATTTGAATATAAGGATTCCAGCAGCTAGCAAGGTCGCAATTG
TCGGGCCAACTGGTGCTGGTAAGTCAACCCTGATCAATCTCCTCATGCGCTTTTACAATGTAGACAGTGGTCTTATTTCG
CTAGACGATGTTCCCATTAGTCATTACACCAGAGCTTCTTATCGTCAGCAGTTCGGTATGGTACTGCAAGAGACTTGGCT
CAAGACGGCGACCATTCACAACAACATAGCTTTTGGCCGGCCAGACGCAAGCCGAGAAGAGGTCATTGCAGCTGCCAAGG
CGGCAAATGCGCATTTCTTTATCCAGCAGCTGCCTCAGGGCTATGACACCTATCTGGCGGATGCTGGGGACTCACTTTCT
CAAGGTCAGCGGCAGCTCTTGACCATTGCGCGTGTCTTCCTTTCCGTTCCTAAAATCCTAATCTTGGATGAGGCGACTTC
CTCCATTGATACTCGGACAGAAGTCTTGATTCAGGAGGCTTTCAGCAAGCTCATGGTGGGACGGACTAGCTTTATCATCG
CCCATCGTCTGTCCACTATTCAAAATGCGGACATCATCCTCGTCATGGTAGACGGCAATATCGTCGAACATGGTAATCAT
CAGGAGCTCATGGCAGCCAGAGGCGTTTATTACCAAATGCAGACGGCGCAGGAGTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(27-295)

ABC transporter (ABC_tran)

(359-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.046

97.924

0.382

Multiple sequence alignment