Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   A6J85_RS01605 Genome accession   NZ_CP020450
Coordinates   308390..309178 (-) Length   262 a.a.
NCBI ID   WP_008808441.1    Uniprot ID   A8AVD7
Organism   Streptococcus gordonii strain FDAARGOS_257     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 303390..314178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J85_RS01585 (A6J85_01580) gatA 303725..305191 (-) 1467 WP_061596127.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  A6J85_RS01590 (A6J85_01585) gatC 305191..305493 (-) 303 WP_005591696.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  A6J85_RS01595 (A6J85_01590) aspS 305697..307433 (-) 1737 WP_082307180.1 aspartate--tRNA ligase -
  A6J85_RS01600 (A6J85_01595) - 307833..308390 (-) 558 WP_046165062.1 cysteine hydrolase family protein -
  A6J85_RS01605 (A6J85_01600) codY 308390..309178 (-) 789 WP_008808441.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  A6J85_RS01610 (A6J85_01605) - 309461..312139 (-) 2679 WP_082307181.1 SEC10/PgrA surface exclusion domain-containing protein -
  A6J85_RS01615 (A6J85_01610) - 312516..313730 (-) 1215 WP_008808439.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29801.06 Da        Isoelectric Point: 5.0874

>NTDB_id=186598 A6J85_RS01605 WP_008808441.1 308390..309178(-) (codY) [Streptococcus gordonii strain FDAARGOS_257]
MAHLLEKTRKITSILKRSEEQLQEELPYNDITRQLAEIMDCNACIVNSKGRLLGYFMRYKTNNDRVEAFYQTKMFPDDYI
RSANLIYDTEANLPVEHELSIFPVETQSDFPDGLTTIAPIHVSGIRLGSLIIWRNDEKFDNDDLVLVEISSTVVGIQLLN
FQREEDEKNIRRRTAVTMAVNTLSYSELRAVSAILGELNGNEGHLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPDVFEEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=186598 A6J85_RS01605 WP_008808441.1 308390..309178(-) (codY) [Streptococcus gordonii strain FDAARGOS_257]
ATGGCACATTTATTAGAAAAAACAAGAAAAATTACATCTATTTTGAAGCGCTCTGAAGAGCAGCTTCAAGAAGAGTTGCC
ATACAATGACATTACAAGACAGTTGGCAGAAATTATGGACTGTAATGCTTGTATTGTTAATAGCAAGGGACGTTTGTTGG
GTTACTTTATGCGGTACAAAACAAACAATGACCGTGTAGAGGCCTTCTACCAAACTAAAATGTTCCCAGATGATTATATT
CGTTCTGCTAATTTAATTTACGATACAGAGGCTAATTTGCCAGTCGAGCATGAATTATCCATCTTTCCGGTTGAGACACA
GTCGGATTTTCCAGATGGTTTGACAACCATTGCACCTATTCATGTTTCAGGGATTCGTTTGGGATCTTTGATTATTTGGC
GAAATGACGAGAAATTTGATAATGATGATTTGGTCTTAGTAGAAATTTCAAGTACCGTTGTGGGCATTCAGTTATTGAAT
TTCCAAAGAGAAGAAGATGAAAAGAATATCCGTCGTCGTACAGCAGTGACAATGGCAGTAAACACTTTGTCTTATTCAGA
ATTACGAGCTGTTTCGGCCATTTTAGGAGAGCTAAATGGGAATGAAGGCCACTTGACAGCTTCTGTCATTGCTGACCGTA
TTGGAATTACACGGTCTGTTATTGTCAATGCCTTGCGTAAGCTAGAGAGTGCTGGGATCATTGAGAGCCGGTCTTTGGGA
ATGAAAGGGACCTATCTGAAAGTGCTGATTCCAGATGTTTTTGAGGAAATTAAAAAGAGGGACTACTGA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8AVD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

62.214

100

0.622
  codY Bacillus subtilis subsp. subtilis str. 168

47.967

93.893

0.45