Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   A6J72_RS08885 Genome accession   NZ_CP020433
Coordinates   1762538..1764307 (+) Length   589 a.a.
NCBI ID   WP_082312264.1    Uniprot ID   -
Organism   Streptococcus intermedius strain FDAARGOS_233     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1757538..1769307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J72_RS08860 (A6J72_08835) - 1758013..1758243 (+) 231 WP_014829739.1 DUF1146 family protein -
  A6J72_RS08865 (A6J72_08840) murA 1758281..1759561 (+) 1281 WP_009569013.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  A6J72_RS08870 (A6J72_08845) - 1759554..1759730 (+) 177 WP_003072163.1 DNA-directed RNA polymerase subunit beta -
  A6J72_RS08875 (A6J72_08850) endA 1759793..1760638 (+) 846 WP_003072166.1 DNA/RNA non-specific endonuclease Machinery gene
  A6J72_RS08880 (A6J72_08855) - 1760792..1762528 (+) 1737 WP_082312263.1 ABC transporter ATP-binding protein -
  A6J72_RS08885 (A6J72_08860) rcrQ 1762538..1764307 (+) 1770 WP_082312264.1 ABC transporter ATP-binding protein Regulator
  A6J72_RS08890 (A6J72_08865) - 1764680..1765681 (-) 1002 WP_082312265.1 YdcF family protein -
  A6J72_RS08905 (A6J72_08880) - 1766409..1766789 (+) 381 WP_082312266.1 CidA/LrgA family protein -
  A6J72_RS08910 (A6J72_08885) - 1766782..1767477 (+) 696 WP_003072176.1 LrgB family protein -
  A6J72_RS08915 (A6J72_08890) - 1767601..1768113 (+) 513 WP_082312267.1 adenine phosphoribosyltransferase -
  A6J72_RS08920 (A6J72_08895) - 1768218..1769065 (+) 848 Protein_1701 homoserine O-succinyltransferase -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 66193.39 Da        Isoelectric Point: 5.5213

>NTDB_id=186471 A6J72_RS08885 WP_082312264.1 1762538..1764307(+) (rcrQ) [Streptococcus intermedius strain FDAARGOS_233]
MKQHSFMRLWSYLKVYKLSVILAIFLKVVSIVMSVLEPFVLGLAITELTRNVLDIAKGVEGASINTTYVFWVMALYLLRG
LFYEIGAYYSNYFMTNAVQNTVRDMRNELSSKINQIPVSYFDKHQFGDLLGRFTSDVETVSNALQQSFLQVVNAVLTITL
VIGMVLYLNFQLALIVIASIPLTYFGATFILKKSQPYFKKQADTLGVMNGFVQENLTGFNVLKLYGREETSSDDFREITQ
NLQEVGFKASFISGLMMPILNAISDLTYLLVAVVGGLQVISGQLTIGNMQAFVQYVWQVNQPIQNLTQLAGQLQSAKSSL
DRIFQVLDEPDEVTDIKEQLEHDLTGQVSFQHVDFQYVESKPLIRNFNLEVKPGEMVAIVGPTGAGKTTLINLLMRFYDV
TAGSISVDGHDIRNLSRQDYRKQFGMVLQDAWLYEGTVKDNLRFGNLSATDEEIMDAAKAANVDHFIRTLPGGYNMEMNQ
ESSNISLGQKQLLTIARALLANPKILILDEATSSVDTRLELLIQKAMKNLMQGRTSFVIAHRLSTIQEADKILVLKDGQI
IEQGTHESLLADRGFYYDLYTSQFAKKEA

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=186471 A6J72_RS08885 WP_082312264.1 1762538..1764307(+) (rcrQ) [Streptococcus intermedius strain FDAARGOS_233]
ATGAAACAACATAGTTTTATGCGTTTGTGGAGTTACTTAAAAGTTTATAAACTCTCAGTAATCCTTGCTATCTTTTTGAA
GGTGGTGAGTATTGTGATGAGCGTGCTAGAGCCTTTTGTACTTGGTCTTGCTATTACAGAATTGACACGAAATGTGCTGG
ACATAGCAAAAGGAGTCGAAGGCGCCAGTATAAACACAACATATGTTTTTTGGGTAATGGCACTTTACCTTTTGCGTGGT
TTGTTCTATGAAATTGGGGCTTACTATTCTAATTATTTTATGACCAATGCAGTGCAAAATACAGTACGGGACATGCGCAA
TGAGTTGAGTTCTAAAATTAATCAAATTCCAGTTTCTTACTTTGATAAGCATCAATTTGGAGATTTACTAGGGCGCTTTA
CCAGTGATGTAGAGACTGTTTCAAATGCGCTTCAACAATCATTCTTACAAGTTGTAAATGCGGTTTTGACCATTACCTTA
GTTATCGGAATGGTCTTGTATCTTAATTTTCAACTGGCTTTGATAGTGATTGCTAGCATTCCATTGACCTATTTTGGGGC
GACCTTTATTTTGAAAAAATCACAACCGTATTTTAAAAAGCAAGCAGATACGCTAGGTGTCATGAATGGATTTGTTCAAG
AAAATCTAACTGGTTTTAATGTGCTGAAACTCTATGGTCGTGAAGAAACATCTTCAGACGATTTTCGAGAAATCACGCAA
AACCTCCAAGAAGTCGGGTTCAAAGCTAGTTTTATTTCTGGCTTGATGATGCCAATTTTGAACGCAATTTCAGATTTGAC
TTATCTGCTTGTAGCAGTTGTTGGTGGTTTGCAAGTCATTTCTGGACAATTAACAATTGGGAACATGCAAGCTTTTGTAC
AATATGTTTGGCAAGTAAACCAACCAATTCAAAATTTAACGCAGTTAGCTGGGCAATTACAAAGTGCTAAGTCTTCGCTG
GATCGTATTTTCCAAGTCTTAGATGAACCAGACGAAGTAACGGATATAAAAGAGCAATTAGAACATGATTTGACAGGACA
GGTTAGTTTTCAACATGTTGATTTTCAATATGTGGAAAGCAAACCGCTCATTCGCAACTTCAATTTGGAGGTAAAGCCGG
GTGAAATGGTAGCAATTGTCGGTCCGACCGGTGCTGGAAAGACCACCCTCATCAATCTACTTATGCGCTTTTACGATGTA
ACAGCAGGTTCAATTTCTGTTGATGGTCACGATATTCGCAACTTATCGCGCCAAGATTACCGCAAGCAATTTGGCATGGT
CTTGCAAGACGCTTGGCTCTATGAAGGAACAGTCAAGGATAATTTGCGTTTTGGAAATCTGAGTGCAACAGATGAAGAAA
TTATGGACGCTGCCAAAGCTGCTAATGTAGATCATTTCATTCGGACACTCCCAGGTGGCTATAATATGGAAATGAATCAG
GAATCTAGCAATATCTCGCTGGGGCAAAAACAATTATTGACCATTGCGCGAGCACTATTGGCAAATCCCAAAATCTTAAT
TTTGGATGAAGCAACCTCGTCAGTTGATACGCGCTTAGAGCTCTTGATTCAAAAAGCGATGAAGAACCTCATGCAAGGAC
GGACAAGCTTTGTCATTGCTCACCGCTTATCGACAATTCAAGAAGCTGATAAAATTTTAGTCCTTAAAGACGGACAAATT
ATTGAACAAGGAACTCATGAATCACTTCTAGCTGATAGAGGCTTCTATTATGATTTATATACAAGCCAATTTGCTAAGAA
AGAAGCTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(365-513)

ABC transporter transmembrane region (ABC_membrane)

(20-302)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.939

100

0.443