Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   A4W79_RS01275 Genome accession   NZ_CP016221
Coordinates   255980..256537 (+) Length   185 a.a.
NCBI ID   WP_035185909.1    Uniprot ID   A0AAJ0LDD0
Organism   Latilactobacillus curvatus strain TMW 1.421     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 250980..261537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W79_RS01250 (A4W79_01210) - 251025..252137 (+) 1113 WP_004265009.1 PIN/TRAM domain-containing protein -
  A4W79_RS01255 (A4W79_01215) cysS 252683..254089 (+) 1407 WP_004265043.1 cysteine--tRNA ligase -
  A4W79_RS01260 (A4W79_01220) - 254086..254493 (+) 408 WP_004265086.1 Mini-ribonuclease 3 -
  A4W79_RS01265 (A4W79_01225) rlmB 254480..255367 (+) 888 WP_004265172.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  A4W79_RS01270 (A4W79_01230) - 255371..255904 (+) 534 WP_004265051.1 NYN domain-containing protein -
  A4W79_RS01275 (A4W79_01235) sigH 255980..256537 (+) 558 WP_035185909.1 sigma-70 family RNA polymerase sigma factor Regulator
  A4W79_RS01280 (A4W79_01240) - 256816..257133 (+) 318 WP_004265021.1 PTS sugar transporter subunit IIB -
  A4W79_RS01285 - 257266..257412 (+) 147 WP_253726720.1 YccF domain-containing protein -
  A4W79_RS01290 (A4W79_01245) - 257563..259505 (-) 1943 Protein_256 ABC-F family ATP-binding cassette domain-containing protein -
  A4W79_RS01295 (A4W79_01250) - 259701..260348 (+) 648 WP_076786782.1 redox-sensing transcriptional repressor Rex -
  A4W79_RS01300 (A4W79_01255) - 260401..261033 (-) 633 WP_076786783.1 CPBP family intramembrane glutamic endopeptidase -
  A4W79_RS01305 (A4W79_01260) groES 261205..261489 (+) 285 WP_076786785.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 21709.91 Da        Isoelectric Point: 6.2310

>NTDB_id=186307 A4W79_RS01275 WP_035185909.1 255980..256537(+) (sigH) [Latilactobacillus curvatus strain TMW 1.421]
MELAKRDANLIQAVVENDSEALDVLFKAYLPMVYRTFTPYYIRLFDEDDWLQEARIVCYETCQCYDQNCGKSFGGFYKLR
FHHHVLNLIRKELAQKRRVDQQALLFDCCPECNALAEDTVAYYQSTVEMRAYLETLSALELVAFRVLTGQLAVEQACSQL
DCTFEQMKRAQSRCQTKLKRFYTKQ

Nucleotide


Download         Length: 558 bp        

>NTDB_id=186307 A4W79_RS01275 WP_035185909.1 255980..256537(+) (sigH) [Latilactobacillus curvatus strain TMW 1.421]
ATGGAATTAGCAAAACGTGATGCAAACTTAATTCAAGCGGTGGTTGAAAACGATTCTGAGGCGTTGGATGTTTTATTTAA
AGCCTACCTACCAATGGTTTATCGCACCTTTACTCCATATTATATTCGCTTATTTGATGAGGACGATTGGTTACAAGAAG
CGCGAATCGTCTGTTATGAGACTTGCCAGTGTTATGATCAAAATTGCGGCAAAAGTTTTGGTGGTTTTTATAAATTACGC
TTTCACCACCACGTATTAAACTTGATTCGCAAAGAACTTGCTCAGAAACGACGGGTCGATCAGCAAGCCCTGTTATTTGA
TTGTTGTCCGGAATGCAATGCGCTCGCTGAAGATACCGTGGCATACTATCAGTCAACGGTTGAAATGCGGGCGTACTTAG
AGACACTATCTGCTTTAGAGTTAGTGGCCTTTCGGGTTTTGACGGGGCAACTAGCAGTTGAGCAAGCGTGTAGCCAGCTA
GATTGCACGTTTGAACAGATGAAACGGGCACAATCGCGTTGCCAGACAAAATTAAAACGATTCTATACTAAACAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Latilactobacillus sakei subsp. sakei 23K

73.077

98.378

0.719

Multiple sequence alignment