Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilJ   Type   Machinery gene
Locus tag   A6J46_RS10165 Genome accession   NZ_CP020419
Coordinates   1742902..1743882 (-) Length   326 a.a.
NCBI ID   WP_105211411.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FDAARGOS_207     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1737902..1748882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J46_RS10130 (A6J46_10210) yaaA 1737933..1738712 (-) 780 WP_047951699.1 peroxide stress protein YaaA -
  A6J46_RS10135 (A6J46_10215) dapC 1738868..1740055 (-) 1188 WP_082298765.1 succinyldiaminopimelate transaminase -
  A6J46_RS10140 (A6J46_10220) dut 1740133..1740585 (-) 453 WP_047925987.1 dUTP diphosphatase -
  A6J46_RS10145 (A6J46_13495) - 1740751..1741462 (+) 712 Protein_1748 AzlC family ABC transporter permease -
  A6J46_RS10150 (A6J46_10230) - 1741459..1741767 (+) 309 WP_010951048.1 AzlD family protein -
  A6J46_RS10155 (A6J46_10235) pilL 1741837..1742310 (-) 474 WP_025456309.1 PilX family type IV pilin Machinery gene
  A6J46_RS10160 (A6J46_10240) pilK 1742312..1742923 (-) 612 WP_010951047.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  A6J46_RS10165 (A6J46_10245) pilJ 1742902..1743882 (-) 981 WP_105211411.1 PilW family protein Machinery gene
  A6J46_RS10170 (A6J46_10250) pilV/pilI 1743879..1744496 (-) 618 WP_082298766.1 type IV pilus modification protein PilV Regulator
  A6J46_RS10175 (A6J46_10255) - 1744528..1745190 (-) 663 Protein_1754 GspH/FimT family pseudopilin -
  A6J46_RS10185 (A6J46_10260) dnaB 1745498..1746904 (-) 1407 WP_082298767.1 replicative DNA helicase -
  A6J46_RS10195 (A6J46_10270) - 1747068..1747650 (+) 583 Protein_1756 superoxide dismutase -
  A6J46_RS10205 (A6J46_10280) - 1747880..1748389 (-) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -

Sequence


Protein


Download         Length: 326 a.a.        Molecular weight: 35731.81 Da        Isoelectric Point: 9.3607

>NTDB_id=185983 A6J46_RS10165 WP_105211411.1 1742902..1743882(-) (pilJ) [Neisseria gonorrhoeae strain FDAARGOS_207]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSIIVLIAVVSSYFTSRKLNDVANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHTKGDIVDSSNQTQSNLVKPGAKQENPLFSLKRSGMDKQLIPVAESADIKYPGFIQRLNALVFQYGIDDLDASA
ETVVVSSCSKIAKPGKKISTLQEAKSALQITNDDKQNGNITRQKHVVNAYAVGMIAGNEEGLFRFQLDDKGKWGNPQLLA
KKIKRMDVQYIYVSGCPEDEDAGKEEQFKYTDRFDRSKNAVTPAGVEVLLDSGLNAKIAASSDNSIYAYRINATIRGGNV
CANRTL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=185983 A6J46_RS10165 WP_105211411.1 1742902..1743882(-) (pilJ) [Neisseria gonorrhoeae strain FDAARGOS_207]
ATGAAACGTAAAATGCTAAACGTACCAAAAGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTATAATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGTGGCAAACG
AGCGTCTTGCCATTCAACAGGATTTGCGGAATGCGGCAACATTAATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCCGAGCATACTAAAGGCGATATTGTTGATTCAAGTAATCAAACTCAATCTAACCTTGTAAAACCCGG
TGCCAAACAAGAAAATCCCCTTTTTTCCTTAAAAAGGAGCGGCATGGATAAACAACTGATTCCCGTTGCTGAATCCGCAG
ATATTAAATATCCGGGTTTTATCCAGCGCCTTAACGCATTGGTTTTCCAATACGGTATCGATGATCTTGATGCGAGTGCT
GAGACTGTTGTAGTCAGCAGCTGTTCCAAAATAGCAAAACCGGGTAAGAAAATATCTACCTTGCAAGAAGCAAAGAGTGC
ATTACAGATTACTAATGATGATAAACAAAATGGAAATATCACCCGTCAGAAACATGTGGTCAATGCCTATGCGGTCGGCA
TGATTGCCGGTAATGAGGAAGGTTTGTTCCGCTTCCAATTGGATGATAAGGGCAAGTGGGGTAATCCTCAGTTGCTCGCG
AAAAAGATTAAACGTATGGATGTGCAGTATATTTATGTTTCCGGTTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACA
ATTCAAATATACGGATAGATTCGACAGATCCAAAAATGCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGCC
TTAATGCCAAGATTGCCGCTTCTTCAGACAATAGTATTTATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTA
TGCGCAAACAGAACACTTTGA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

76.9

100

0.776