Detailed information
Bioinformatically predicted
Overview
| Name | pilL-C | Type | Machinery gene |
| Locus tag | A6J62_RS10440 | Genome accession | NZ_CP020408 |
| Coordinates | 1055969..1056349 (+) | Length | 126 a.a. |
| NCBI ID | WP_000045526.1 | Uniprot ID | Q6BBL2 |
| Organism | Vibrio cholerae strain FDAARGOS_223 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1050969..1061349
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6J62_RS10415 (A6J62_10280) | - | 1051562..1052218 (+) | 657 | WP_000974695.1 | HEAT repeat domain-containing protein | - |
| A6J62_RS10420 (A6J62_10285) | - | 1052229..1053095 (+) | 867 | WP_001002908.1 | protein-glutamate O-methyltransferase CheR | - |
| A6J62_RS10425 (A6J62_10290) | - | 1053073..1053444 (+) | 372 | WP_000757478.1 | PleD family two-component system response regulator | - |
| A6J62_RS10430 (A6J62_10295) | - | 1053453..1055726 (+) | 2274 | WP_001178898.1 | chemotaxis protein CheA | - |
| A6J62_RS10435 (A6J62_10300) | - | 1055716..1055976 (+) | 261 | WP_001143862.1 | hypothetical protein | - |
| A6J62_RS10440 (A6J62_10305) | pilL-C | 1055969..1056349 (+) | 381 | WP_000045526.1 | response regulator | Machinery gene |
| A6J62_RS10445 (A6J62_10310) | - | 1056357..1057592 (+) | 1236 | WP_000621946.1 | methyl-accepting chemotaxis protein | - |
| A6J62_RS10450 (A6J62_10315) | - | 1057647..1057961 (-) | 315 | WP_000312387.1 | multidrug efflux SMR transporter | - |
| A6J62_RS10455 (A6J62_10320) | - | 1058107..1059621 (-) | 1515 | WP_000411504.1 | cryptochrome/deoxyribodipyrimidine photo-lyase family protein | - |
| A6J62_RS10460 (A6J62_10325) | - | 1059777..1061183 (-) | 1407 | WP_000545341.1 | MDR family MFS transporter | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13674.04 Da Isoelectric Point: 9.8959
>NTDB_id=185666 A6J62_RS10440 WP_000045526.1 1055969..1056349(+) (pilL-C) [Vibrio cholerae strain FDAARGOS_223]
MSKSILIVDDSSTVLMSVDAMLSKLGFQVEKAKDGVEAETRLKGGLKVNLIITDINMPRMDGIELISKIRAIASYRFTPI
LVLTTEQEQAKRNEARAKGATGYLVKPVTGDQLKAVIQQVLPGSIS
MSKSILIVDDSSTVLMSVDAMLSKLGFQVEKAKDGVEAETRLKGGLKVNLIITDINMPRMDGIELISKIRAIASYRFTPI
LVLTTEQEQAKRNEARAKGATGYLVKPVTGDQLKAVIQQVLPGSIS
Nucleotide
Download Length: 381 bp
>NTDB_id=185666 A6J62_RS10440 WP_000045526.1 1055969..1056349(+) (pilL-C) [Vibrio cholerae strain FDAARGOS_223]
ATGTCTAAAAGCATTCTGATTGTTGATGACTCTAGTACTGTTCTTATGAGTGTCGATGCCATGCTCTCTAAACTGGGTTT
CCAAGTCGAGAAAGCAAAAGATGGCGTTGAAGCAGAAACTCGACTCAAAGGTGGTCTAAAAGTCAACCTCATCATTACCG
ACATCAATATGCCTCGTATGGATGGTATTGAGTTGATTAGCAAAATTCGTGCGATTGCTTCATATCGCTTTACCCCAATT
TTAGTGCTCACTACAGAACAAGAACAAGCCAAACGCAATGAGGCTCGCGCCAAAGGTGCAACAGGTTATTTAGTTAAGCC
CGTAACGGGAGATCAATTGAAAGCCGTGATTCAACAAGTTCTCCCAGGTAGTATTTCGTGA
ATGTCTAAAAGCATTCTGATTGTTGATGACTCTAGTACTGTTCTTATGAGTGTCGATGCCATGCTCTCTAAACTGGGTTT
CCAAGTCGAGAAAGCAAAAGATGGCGTTGAAGCAGAAACTCGACTCAAAGGTGGTCTAAAAGTCAACCTCATCATTACCG
ACATCAATATGCCTCGTATGGATGGTATTGAGTTGATTAGCAAAATTCGTGCGATTGCTTCATATCGCTTTACCCCAATT
TTAGTGCTCACTACAGAACAAGAACAAGCCAAACGCAATGAGGCTCGCGCCAAAGGTGCAACAGGTTATTTAGTTAAGCC
CGTAACGGGAGATCAATTGAAAGCCGTGATTCAACAAGTTCTCCCAGGTAGTATTTCGTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilL-C | Synechocystis sp. PCC 6803 |
39.2 |
99.206 |
0.389 |