Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   FBA2_RS01835 Genome accession   NZ_CP016028
Coordinates   386955..387512 (+) Length   185 a.a.
NCBI ID   WP_039098349.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain FBA2     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 381955..392512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FBA2_RS01810 (FBA2_01810) - 382004..383116 (+) 1113 WP_039098346.1 PIN/TRAM domain-containing protein -
  FBA2_RS01815 (FBA2_01815) cysS 383658..385064 (+) 1407 WP_064776896.1 cysteine--tRNA ligase -
  FBA2_RS01820 (FBA2_01820) - 385061..385468 (+) 408 WP_064776897.1 Mini-ribonuclease 3 -
  FBA2_RS01825 (FBA2_01825) rlmB 385455..386342 (+) 888 WP_081272977.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  FBA2_RS01830 (FBA2_01830) - 386346..386879 (+) 534 WP_039098348.1 NYN domain-containing protein -
  FBA2_RS01835 (FBA2_01835) sigH 386955..387512 (+) 558 WP_039098349.1 sigma-70 family RNA polymerase sigma factor Regulator
  FBA2_RS01840 (FBA2_01840) - 387793..388110 (+) 318 WP_004265021.1 PTS sugar transporter subunit IIB -
  FBA2_RS01845 (FBA2_01845) - 388216..388575 (+) 360 WP_064776898.1 YccF domain-containing protein -
  FBA2_RS01850 (FBA2_01850) - 388726..390669 (-) 1944 WP_064777565.1 ABC-F family ATP-binding cassette domain-containing protein -
  FBA2_RS01855 (FBA2_01855) - 390865..391512 (+) 648 WP_004265080.1 redox-sensing transcriptional repressor Rex -
  FBA2_RS01860 (FBA2_01860) - 391565..392197 (-) 633 WP_039098352.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 21752.94 Da        Isoelectric Point: 6.6648

>NTDB_id=185444 FBA2_RS01835 WP_039098349.1 386955..387512(+) (sigH) [Latilactobacillus curvatus strain FBA2]
MESAKRDANLIQAVVENDSEALDVLFKAYLPMVYRTFTPYYIRLFDEDDWLQEARIVCYETCQCYDQNCGKSFGGFYKLR
FHHHVLNLIRKELAQKRRVDQQALLFDCCPECNALAEDTVAYYQSTVEMRAYLETLSALELVAFRVLTGQLAVEQACRQL
DCTFEQMKRAQSRCQTKLKRFYTKQ

Nucleotide


Download         Length: 558 bp        

>NTDB_id=185444 FBA2_RS01835 WP_039098349.1 386955..387512(+) (sigH) [Latilactobacillus curvatus strain FBA2]
ATGGAATCAGCAAAACGTGATGCAAACTTAATTCAAGCGGTGGTTGAAAACGATTCTGAGGCGTTGGATGTTTTATTTAA
AGCCTACCTACCAATGGTTTATCGCACCTTTACTCCATATTATATTCGCTTATTTGATGAGGACGATTGGTTACAAGAAG
CGCGAATCGTCTGTTATGAGACTTGCCAGTGTTATGATCAAAATTGCGGCAAAAGTTTTGGTGGTTTTTATAAATTACGC
TTTCACCACCACGTATTAAACTTGATTCGCAAAGAACTTGCTCAGAAACGACGGGTCGATCAGCAAGCCCTGTTATTTGA
TTGTTGTCCGGAATGCAATGCGCTCGCTGAAGATACCGTTGCATACTATCAGTCAACGGTTGAAATGCGGGCGTACTTAG
AGACACTATCTGCTTTAGAGTTAGTGGCCTTTCGGGTTTTGACGGGGCAACTAGCAGTTGAGCAAGCGTGTCGTCAGCTA
GATTGCACGTTTGAACAGATGAAACGGGCACAATCGCGTTGCCAGACAAAATTAAAACGATTCTATACTAAACAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Latilactobacillus sakei subsp. sakei 23K

73.077

98.378

0.719

Multiple sequence alignment