Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   A9C19_RS11355 Genome accession   NZ_CP016020
Coordinates   2352854..2353633 (-) Length   259 a.a.
NCBI ID   WP_072580057.1    Uniprot ID   A0A1L3MSF1
Organism   Bacillus weihaiensis strain Alg07     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2347854..2358633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9C19_RS11330 (A9C19_11115) fliG 2348390..2349406 (-) 1017 WP_072580052.1 flagellar motor switch protein FliG -
  A9C19_RS11335 (A9C19_11120) fliF 2349419..2351020 (-) 1602 WP_072580053.1 flagellar basal-body MS-ring/collar protein FliF -
  A9C19_RS11340 (A9C19_11125) fliE 2351089..2351385 (-) 297 WP_072580054.1 flagellar hook-basal body complex protein FliE -
  A9C19_RS11345 (A9C19_11130) flgC 2351396..2351845 (-) 450 WP_072580055.1 flagellar basal body rod protein FlgC -
  A9C19_RS11350 (A9C19_11135) flgB 2351848..2352243 (-) 396 WP_072580056.1 flagellar basal body rod protein FlgB -
  A9C19_RS11355 (A9C19_11140) codY 2352854..2353633 (-) 780 WP_072580057.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  A9C19_RS11360 (A9C19_11145) hslU 2353667..2355067 (-) 1401 WP_072580058.1 HslU--HslV peptidase ATPase subunit -
  A9C19_RS11365 (A9C19_11150) hslV 2355086..2355628 (-) 543 WP_072580059.1 ATP-dependent protease subunit HslV -
  A9C19_RS11370 (A9C19_11155) xerC 2355653..2356561 (-) 909 WP_072580060.1 tyrosine recombinase XerC -
  A9C19_RS11375 (A9C19_11160) trmFO 2356625..2357935 (-) 1311 WP_072580061.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28995.37 Da        Isoelectric Point: 4.7462

>NTDB_id=185315 A9C19_RS11355 WP_072580057.1 2352854..2353633(-) (codY) [Bacillus weihaiensis strain Alg07]
MALLQKTRKINAMLQKAAGKPVNFKEMAETLSDVIEANIFVVSRRGKLLGFAVNQQIENERMKKMLEDRQFPEEYTNNLF
NITETSSNIDVYSEYTAFPVENRELFKNGLTTIVPIIGGGERLGTLILARVQEQFADEDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELSGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLLELEKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=185315 A9C19_RS11355 WP_072580057.1 2352854..2353633(-) (codY) [Bacillus weihaiensis strain Alg07]
ATGGCTCTATTACAGAAAACGCGTAAAATTAACGCAATGCTACAAAAGGCAGCAGGAAAACCGGTGAATTTTAAAGAAAT
GGCAGAAACATTAAGTGATGTTATTGAGGCTAATATCTTTGTGGTTAGTCGTCGTGGGAAATTATTAGGTTTTGCAGTTA
ATCAACAAATTGAAAATGAACGTATGAAAAAAATGTTAGAGGATCGACAATTTCCAGAAGAGTATACAAATAATTTGTTT
AATATTACAGAGACTTCTTCTAATATTGATGTCTATAGTGAATATACAGCATTCCCAGTTGAAAACCGTGAATTATTTAA
AAATGGTTTAACGACAATAGTACCTATTATTGGTGGTGGTGAGCGTCTCGGTACACTGATTCTTGCTAGAGTTCAGGAGC
AATTTGCAGATGAAGATCTTATCCTTGCTGAATATGGTGCAACCGTTGTAGGGATGGAAATCTTACGTGAAAAAGCGGAG
GAGATTGAAGAAGAAGCTAGAAGTAAGGCTGTAGTCCAAATGGCAATTAGTTCTCTTTCCTACAGTGAGCTTGAAGCAAT
CGAACATATTTTTGAAGAGTTAAGTGGTAATGAAGGGTTGTTAGTTGCAAGTAAAATAGCGGATCGTGTAGGTATTACAA
GATCTGTTATCGTTAATGCACTTCGTAAGCTAGAAAGTGCCGGTGTTATCGAGTCTCGCTCTTTAGGAATGAAAGGAACA
TATATTAAAGTACTAAATGATAAATTTTTATTAGAGTTGGAAAAGTTAAAAACTAACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1L3MSF1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

88.417

100

0.884
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.773

95.367

0.456

Multiple sequence alignment