Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   A9C19_RS05770 Genome accession   NZ_CP016020
Coordinates   1222886..1225246 (+) Length   786 a.a.
NCBI ID   WP_072579057.1    Uniprot ID   A0A1L3MPU8
Organism   Bacillus weihaiensis strain Alg07     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1217886..1230246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9C19_RS05750 (A9C19_05615) - 1218512..1218805 (+) 294 WP_072581761.1 post-transcriptional regulator -
  A9C19_RS05755 (A9C19_05620) secDF 1219121..1221361 (+) 2241 WP_199445828.1 protein translocase subunit SecDF -
  A9C19_RS05760 (A9C19_05625) - 1221553..1222404 (+) 852 WP_420835819.1 cation diffusion facilitator family transporter -
  A9C19_RS05765 (A9C19_05630) - 1222425..1222778 (+) 354 WP_072579056.1 LapA family protein -
  A9C19_RS05770 (A9C19_05635) recJ 1222886..1225246 (+) 2361 WP_072579057.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  A9C19_RS05775 (A9C19_05640) - 1225263..1225775 (+) 513 WP_072581762.1 adenine phosphoribosyltransferase -
  A9C19_RS05780 (A9C19_05645) - 1226657..1228864 (+) 2208 WP_072579058.1 RelA/SpoT family protein -
  A9C19_RS05785 (A9C19_05650) dtd 1228880..1229317 (+) 438 WP_072579059.1 D-aminoacyl-tRNA deacylase -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 88343.19 Da        Isoelectric Point: 5.0192

>NTDB_id=185300 A9C19_RS05770 WP_072579057.1 1222886..1225246(+) (recJ) [Bacillus weihaiensis strain Alg07]
MLKAKTRWLEQEKDEEIIQLFVEELEITPLVASLLVNRGIKTIEKARAFLLIEKQDFHDPFLLKDMDKAVHRINEAIDQE
EKILIYGDYDADGVSSTTVLLTTLRGMGANVDFYIPNRFTEGYGPNEAAFRQAHSSGYGLIITVDTGIAAVHEAEVAKEL
GIDLIITDHHEPGPVLPDALAIVHPKQPGCSYPFKELAGVGVAFKLSSALLGEVPTDLLEVAAIGTIADLVALHGENRLI
AKKGIQQLKSTNRVGLQALLKVANVQKNDINEDTIGFSIGPRINAVGRLQSADPAVDLLLSEDIEEATELAEEIDLLNKE
RKKLVNQMTEEAILEVETHYPIENNPVLIIAKENWNPGVVGIVASRLVDRYYRPTIVLSIDPEKGTAKGSARSIEGFDLF
ENLSTCREILPHFGGHPMAAGMTLDVNHVDQLRQRLIDLANRQLTENDFTPITKVDVSCSLEEITVQSIEEMQLLAPFGM
NNPKPIVQVVDVTLANVRKIGADQTHLKLVFSQNEHQLDSVGFGLGHIHDELSPYVTISAIGELTINEWNNHRKPQIMLQ
DVKVEDWQLFDLRGSSNIDRLLKMHLNKELLFITFKKSTYTLLKEKGVAETCHFVQSKDDAINVDVKDRHIAMIDLPPSL
ELMDSLFQKGKPARVYSVFMQEADHFFATIPTREHFKWFYGFLLKKGSFHLKEQGELLAKHKGWSKETIEFMSQVFFELE
FVTIENGVISTNSTTQKRDLAESKTYADKLMQIELEKTLLYTSYMQLKEWFESRFQASSKEAIVNV

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=185300 A9C19_RS05770 WP_072579057.1 1222886..1225246(+) (recJ) [Bacillus weihaiensis strain Alg07]
ATGTTAAAAGCAAAAACAAGATGGTTGGAACAAGAGAAAGATGAAGAGATAATCCAACTATTTGTAGAAGAATTAGAGAT
TACGCCACTTGTTGCATCACTACTCGTAAATCGTGGTATAAAAACGATCGAAAAGGCTAGAGCCTTTTTACTCATTGAGA
AACAAGATTTTCACGATCCTTTTCTTTTAAAAGATATGGACAAGGCAGTTCATCGAATTAATGAAGCGATAGATCAAGAG
GAAAAAATCTTAATATATGGTGACTATGATGCCGATGGTGTTAGTAGTACAACTGTTTTACTGACGACATTAAGAGGAAT
GGGAGCAAACGTAGATTTCTATATTCCTAATCGTTTTACTGAAGGATATGGTCCTAATGAAGCGGCTTTTAGACAAGCTC
ATTCAAGTGGTTATGGGTTAATTATCACTGTCGATACAGGAATTGCTGCGGTACATGAAGCAGAGGTTGCAAAGGAACTT
GGAATAGATTTGATTATTACAGACCATCATGAGCCAGGGCCTGTTCTACCAGATGCATTAGCCATTGTACATCCTAAGCA
ACCTGGATGTTCATATCCTTTTAAAGAGCTAGCTGGTGTTGGGGTTGCTTTTAAACTAAGCTCTGCCCTTTTAGGTGAAG
TACCGACTGACTTACTAGAAGTTGCTGCAATAGGCACCATTGCAGATCTTGTAGCTCTCCATGGAGAGAATCGATTAATT
GCTAAAAAAGGAATTCAACAATTAAAGTCAACGAATCGTGTAGGCTTACAAGCTTTGTTAAAGGTTGCTAATGTGCAGAA
GAACGATATTAATGAAGATACAATAGGTTTTTCGATAGGGCCTAGAATTAATGCAGTGGGAAGATTACAATCGGCAGATC
CAGCAGTAGATCTTTTATTATCAGAGGATATAGAAGAAGCAACGGAGTTAGCGGAAGAAATTGATCTTCTTAACAAAGAA
CGAAAAAAATTAGTAAATCAGATGACAGAAGAAGCTATTCTGGAAGTTGAAACTCATTATCCCATTGAAAACAACCCAGT
TTTAATTATAGCAAAGGAAAATTGGAACCCAGGTGTTGTAGGGATTGTTGCTTCACGATTAGTGGATAGATATTACCGAC
CAACAATTGTGCTAAGTATTGATCCCGAAAAGGGTACGGCTAAAGGCTCGGCAAGAAGTATAGAAGGCTTTGATTTATTT
GAAAACCTTTCAACATGTCGAGAGATTTTACCCCATTTCGGTGGACATCCAATGGCAGCTGGAATGACATTAGATGTCAA
TCATGTCGATCAATTAAGGCAAAGATTAATTGATCTTGCAAACCGTCAACTAACTGAAAATGATTTTACACCGATAACGA
AGGTTGATGTAAGCTGTTCACTTGAGGAAATCACGGTCCAGTCAATTGAAGAGATGCAACTACTTGCACCCTTTGGGATG
AATAATCCAAAACCAATTGTGCAAGTTGTAGACGTTACCCTGGCGAATGTTCGAAAAATTGGGGCAGATCAAACTCATCT
AAAGCTTGTTTTCTCACAAAATGAACATCAATTAGATAGTGTAGGCTTTGGTTTAGGCCATATTCATGATGAATTATCTC
CCTATGTTACTATTTCCGCAATCGGGGAGCTTACCATTAATGAATGGAATAATCACCGTAAGCCTCAAATTATGCTTCAA
GATGTTAAAGTCGAGGATTGGCAGTTATTTGATTTGCGAGGATCGAGTAATATTGACCGACTCTTAAAGATGCATCTGAA
CAAGGAGCTTTTGTTTATTACGTTTAAAAAATCAACATATACGTTGTTAAAGGAGAAAGGAGTGGCAGAAACTTGCCATT
TCGTTCAATCAAAGGATGATGCAATAAATGTTGATGTGAAAGACCGCCATATTGCAATGATTGACTTACCACCGTCATTA
GAATTGATGGATTCACTTTTTCAAAAAGGAAAGCCTGCGAGGGTTTACTCCGTCTTTATGCAAGAAGCAGATCATTTTTT
TGCTACGATTCCTACAAGAGAGCATTTTAAGTGGTTTTATGGCTTTTTACTAAAAAAGGGGTCCTTTCATCTAAAAGAAC
AAGGTGAACTCCTTGCCAAACATAAAGGATGGTCTAAAGAAACAATAGAATTTATGTCACAGGTGTTTTTTGAGCTAGAA
TTTGTTACAATAGAAAATGGTGTTATTTCGACAAATTCTACGACTCAAAAACGAGACTTAGCAGAATCGAAAACCTATGC
AGATAAATTAATGCAGATTGAATTAGAAAAAACGCTATTATATACATCATATATGCAACTAAAAGAATGGTTTGAATCAA
GATTTCAAGCTAGCTCAAAAGAGGCAATTGTGAATGTATAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-771)

DHH family (DHH)

(82-226)

DHHA1 domain (DHHA1)

(316-438)

RecJ OB domain (RecJ_OB)

(455-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1L3MPU8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

56.41

99.237

0.56

Multiple sequence alignment