Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilP   Type   Machinery gene
Locus tag   A9E96_RS04610 Genome accession   NZ_CP015956
Coordinates   1019439..1020026 (+) Length   195 a.a.
NCBI ID   WP_010946665.1    Uniprot ID   Q5ZX03
Organism   Legionella pneumophila strain E9_O     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1014439..1025026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9E96_RS04590 (A9E96_04590) ravI 1015786..1016796 (-) 1011 WP_010946661.1 Dot/Icm T4SS effector RavI -
  A9E96_RS04595 (A9E96_04595) pilM 1017213..1018277 (+) 1065 WP_010946662.1 type IV pilus assembly protein PilM Machinery gene
  A9E96_RS04600 (A9E96_04600) pilN 1018281..1018829 (+) 549 WP_010946663.1 PilN domain-containing protein Machinery gene
  A9E96_RS04605 (A9E96_04605) pilO 1018843..1019442 (+) 600 WP_014841277.1 type 4a pilus biogenesis protein PilO Machinery gene
  A9E96_RS04610 (A9E96_04610) pilP 1019439..1020026 (+) 588 WP_010946665.1 pilus assembly protein PilP Machinery gene
  A9E96_RS04615 (A9E96_04615) pilQ 1020030..1022126 (+) 2097 WP_010946666.1 type IV pilus secretin PilQ Machinery gene
  A9E96_RS04620 (A9E96_04620) aroK 1022572..1023099 (+) 528 WP_010946667.1 shikimate kinase AroK -
  A9E96_RS04625 (A9E96_04625) aroB 1023086..1024195 (+) 1110 WP_010946668.1 3-dehydroquinate synthase -

Sequence


Protein


Download         Length: 195 a.a.        Molecular weight: 22343.91 Da        Isoelectric Point: 10.3617

>NTDB_id=184714 A9E96_RS04610 WP_010946665.1 1019439..1020026(+) (pilP) [Legionella pneumophila strain E9_O]
MIIKNNQTLLILGFFGNSLRTLLTSENFRKSLFTALLVLLLSACSGDNSDLVKYINEVKSRPGRPIEPIPKFAPLPIFRF
PENDNRRNPFKPIDQKKRNDIYAPDKKRPKQPLESFPLDALKFVGTLKKDNEIWALIKQPDGQISRVRVGDYMGQNYGRI
ILIKNDLIKLEETVQKSGTWEKQSTTINLDTGKQE

Nucleotide


Download         Length: 588 bp        

>NTDB_id=184714 A9E96_RS04610 WP_010946665.1 1019439..1020026(+) (pilP) [Legionella pneumophila strain E9_O]
ATGATAATTAAAAATAACCAGACTCTTCTTATATTAGGCTTTTTCGGAAATTCTCTGCGCACTTTACTCACCTCAGAGAA
TTTCCGAAAAAGCCTATTCACAGCGTTATTGGTTCTATTACTTAGTGCCTGCTCTGGTGATAACAGTGACCTTGTTAAGT
ACATCAACGAAGTGAAATCAAGACCAGGAAGACCTATCGAGCCTATTCCCAAATTCGCCCCTTTGCCAATTTTTAGATTT
CCAGAAAACGACAATAGGCGAAATCCATTCAAGCCTATTGATCAAAAAAAGAGAAATGATATTTATGCCCCAGATAAAAA
AAGGCCTAAGCAGCCTTTGGAATCTTTTCCTCTGGATGCTTTAAAATTTGTAGGTACTTTAAAAAAAGACAATGAAATCT
GGGCTCTGATTAAACAACCTGACGGTCAGATTAGCCGTGTTAGGGTTGGAGATTACATGGGACAAAATTATGGACGTATT
ATTTTGATTAAAAATGATCTCATTAAATTGGAAGAAACTGTACAGAAATCAGGAACGTGGGAAAAACAGTCCACCACAAT
TAATTTGGATACTGGCAAGCAGGAGTGA

Domains


Predicted by InterproScan.

(50-189)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q5ZX03

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Legionella pneumophila strain ERS1305867

96.923

100

0.969


Multiple sequence alignment