Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilN   Type   Machinery gene
Locus tag   A9E91_RS04575 Genome accession   NZ_CP015950
Coordinates   1013990..1014538 (+) Length   182 a.a.
NCBI ID   WP_010946663.1    Uniprot ID   -
Organism   Legionella pneumophila strain E4_N     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1008990..1019538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9E91_RS04565 (A9E91_04565) ravI 1011495..1012505 (-) 1011 WP_010946661.1 Dot/Icm T4SS effector RavI -
  A9E91_RS04570 (A9E91_04570) pilM 1012922..1013986 (+) 1065 WP_010946662.1 type IV pilus assembly protein PilM Machinery gene
  A9E91_RS04575 (A9E91_04575) pilN 1013990..1014538 (+) 549 WP_010946663.1 PilN domain-containing protein Machinery gene
  A9E91_RS04580 (A9E91_04580) pilO 1014552..1015151 (+) 600 WP_014841277.1 type 4a pilus biogenesis protein PilO Machinery gene
  A9E91_RS04585 (A9E91_04585) pilP 1015148..1015735 (+) 588 WP_010946665.1 pilus assembly protein PilP Machinery gene
  A9E91_RS04590 (A9E91_04590) pilQ 1015739..1017835 (+) 2097 WP_010946666.1 type IV pilus secretin PilQ Machinery gene
  A9E91_RS04595 (A9E91_04595) aroK 1018281..1018808 (+) 528 WP_010946667.1 shikimate kinase AroK -

Sequence


Protein


Download         Length: 182 a.a.        Molecular weight: 21267.04 Da        Isoelectric Point: 10.1404

>NTDB_id=184502 A9E91_RS04575 WP_010946663.1 1013990..1014538(+) (pilN) [Legionella pneumophila strain E4_N]
MTEINLLPWREQKREQEKKLFTTMLLIGIIIAAAIVFLMNSYVSHLISNQMNRNQILQKEITALDEQIKEIKALKQIREG
LISRMSIVQNLQSTRTLMVHLFDELIKITPPGVYITKMQREHDVVTLWGYSESNTSISILMRNIEANVWIQNPVLTEIKK
NVEKKQSPNNEFKLSFVLKPKY

Nucleotide


Download         Length: 549 bp        

>NTDB_id=184502 A9E91_RS04575 WP_010946663.1 1013990..1014538(+) (pilN) [Legionella pneumophila strain E4_N]
ATGACTGAAATTAATTTATTGCCATGGCGTGAACAAAAACGTGAGCAGGAAAAGAAATTATTTACAACCATGCTATTGAT
AGGAATTATCATCGCTGCAGCAATTGTTTTTTTAATGAACTCTTATGTTTCTCATTTAATAAGTAATCAAATGAACCGAA
ATCAGATTTTACAAAAAGAAATTACAGCTTTAGATGAACAGATCAAGGAGATTAAAGCATTAAAACAAATCAGGGAAGGT
TTGATTTCAAGAATGTCGATTGTGCAGAATCTGCAGTCAACAAGAACTTTAATGGTTCACTTATTTGATGAATTAATAAA
AATTACTCCTCCAGGAGTTTACATAACCAAGATGCAAAGAGAACACGATGTAGTAACACTCTGGGGGTATTCCGAATCGA
ATACAAGTATTTCTATTTTGATGAGAAATATAGAGGCTAATGTCTGGATACAGAACCCTGTTCTAACTGAAATTAAAAAA
AATGTTGAAAAAAAACAGTCTCCAAACAATGAATTTAAATTAAGTTTTGTGCTTAAACCCAAATATTAG

Domains


Predicted by InterproScan.

(100-176)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

99.451

100

0.995


Multiple sequence alignment