Detailed information NTG0183784

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: BS21228_RS17435
• Genome accession: NZ_CP020023
• Coordinates: 3266349..3267521 (+)
• Length: 390 a.a.
• NCBI ID: WP_014479273.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain ATCC 21228
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3261349..3272521

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BS21228_RS17415 (BS21228_17345)	-	3263215..3264204 (+)	990	WP_033881969.1	bifunctional lytic transglycosylase/C40 family peptidase	-
BS21228_RS17420 (BS21228_17350)	-	3264219..3264725 (+)	507	WP_031600318.1	hypothetical protein	-
BS21228_RS17425 (BS21228_17355)	-	3264788..3265171 (+)	384	WP_033881966.1	cystatin-like fold lipoprotein	-
BS21228_RS17430 (BS21228_17360)	-	3265269..3266057 (+)	789	WP_014479271.1	DUF4145 domain-containing protein	-
BS21228_RS17435 (BS21228_17365)	rapF	3266349..3267521 (+)	1173	WP_014479273.1	Rap family tetratricopeptide repeat protein	Regulator
BS21228_RS17440 (BS21228_17370)	-	3267785..3268231 (-)	447	WP_014479275.1	hypothetical protein	-
BS21228_RS17445 (BS21228_17375)	yhcN	3268381..3268956 (+)	576	WP_014479276.1	YhcN/YlaJ family sporulation lipoprotein	-
BS21228_RS17455 (BS21228_17390)	yhcQ	3269977..3270602 (-)	626	Protein_3378	spore coat protein	-

Sequence

Protein

• Length: 390 a.a.
• Molecular weight: 46089.52 Da
• Isoelectric Point: 5.6997

>NTDB_id=183784 BS21228_RS17435 WP_014479273.1 3266349..3267521(+) (rapF) [Bacillus subtilis strain ATCC 21228]
MRGVLDKDKIPYDVVTKKLNEWYTHIKNDALEKAKQIKKEVEEDLKKMEESKDALLYYQLLEFRHELLVNYMNSEKTEEL
KSSYLAMKKLEDQGNVTGMLEYYFHFFMGMYEFRRKKLTAAITSYRKAEAKLSEVDDEIEKAEFFFKVSYVYYYMKQTYF
SLNYAYRALEIYQRYDDYFIQRLRCQFVLGGNFIDSLEYEKALDTFMEALKIAEEIKIDYLIGMAHINIGICFDELKDYK
SASSHLKKALDLLEVSDHSFVAKTLFILTHVKIKQGDKESAGDYFQKGHEFVNKTNDAEYNAKFKILEGLYFSNGEYELI
SEAFAYFDSMKMYADLENYAVEVAQFFHRKQDFQRSSEYYMMSVEARNKIKKGEIINETQSGHIGSSGVN

Nucleotide

• Length: 1173 bp

>NTDB_id=183784 BS21228_RS17435 WP_014479273.1 3266349..3267521(+) (rapF) [Bacillus subtilis strain ATCC 21228]
TTGCGAGGTGTTTTAGATAAAGATAAAATTCCATATGATGTAGTTACAAAAAAATTAAACGAATGGTACACCCATATAAA
AAATGATGCTCTTGAGAAAGCTAAACAAATAAAAAAAGAAGTTGAAGAAGATCTAAAAAAAATGGAAGAAAGTAAAGATG
CTTTACTATATTATCAATTACTTGAATTCCGCCACGAGTTATTGGTCAATTACATGAATTCAGAAAAGACAGAAGAATTG
AAAAGTTCATATCTGGCTATGAAAAAGTTGGAGGACCAGGGCAATGTTACTGGAATGTTGGAATATTATTTTCATTTCTT
TATGGGGATGTATGAATTCAGAAGAAAAAAACTAACTGCGGCAATAACTTCATATAGAAAAGCAGAAGCTAAATTAAGTG
AAGTAGATGATGAGATTGAAAAAGCAGAATTCTTTTTTAAAGTATCATATGTTTATTACTATATGAAGCAAACATACTTT
TCGCTTAACTATGCCTATAGAGCTCTTGAAATATATCAAAGGTATGATGATTACTTTATACAGAGATTAAGATGTCAATT
TGTATTAGGTGGAAACTTTATTGACTCCCTAGAATATGAAAAGGCATTGGATACATTTATGGAAGCGTTAAAAATAGCTG
AAGAAATTAAAATTGATTATTTAATTGGGATGGCACACATCAACATAGGTATTTGCTTTGATGAGTTAAAAGACTACAAA
AGTGCATCAAGTCATCTAAAAAAGGCGTTAGATTTGTTAGAGGTTAGCGATCACAGTTTTGTTGCGAAAACTCTTTTTAT
TTTAACACATGTAAAGATCAAGCAAGGTGACAAAGAATCAGCTGGTGACTATTTTCAAAAAGGACATGAGTTTGTAAATA
AAACAAATGATGCTGAATATAATGCTAAATTTAAAATATTAGAAGGACTTTATTTTTCAAATGGTGAATATGAATTGATT
AGTGAGGCTTTTGCATATTTTGATTCAATGAAAATGTATGCAGATTTAGAGAACTATGCTGTTGAAGTGGCCCAATTTTT
TCATCGGAAACAGGATTTTCAACGCTCAAGTGAATATTATATGATGAGTGTTGAAGCAAGAAACAAAATTAAAAAAGGAG
AGATTATTAATGAAACTCAGTCGGGTCATATTGGCAGTAGCGGTGTTAACTAG

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (9-69)

• Tetratricopeptide repeat (TPR_12) (198-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	38.095	96.923	0.369