Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   B4603_RS06390 Genome accession   NZ_CP020019
Coordinates   1263163..1263936 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain 08S00974     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1258163..1268936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4603_RS06370 trmFO 1258507..1259814 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  B4603_RS06375 xerC 1260231..1261127 (+) 897 WP_001015606.1 tyrosine recombinase XerC -
  B4603_RS06380 hslV 1261124..1261669 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  B4603_RS06385 hslU 1261735..1263138 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  B4603_RS06390 codY 1263163..1263936 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  B4603_RS06395 - 1263987..1264079 (+) 93 WP_001790530.1 hypothetical protein -
  B4603_RS06400 rpsB 1264278..1265045 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  B4603_RS06405 - 1265079..1265192 (+) 114 WP_001789890.1 hypothetical protein -
  B4603_RS06410 tsf 1265227..1266108 (+) 882 WP_000201387.1 translation elongation factor Ts -
  B4603_RS06415 pyrH 1266245..1266967 (+) 723 WP_000057330.1 UMP kinase -
  B4603_RS06420 frr 1266986..1267540 (+) 555 WP_001280006.1 ribosome recycling factor -
  B4603_RS06425 - 1267913..1268683 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=183541 B4603_RS06390 WP_000055337.1 1263163..1263936(+) (codY) [Staphylococcus aureus strain 08S00974]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=183541 B4603_RS06390 WP_000055337.1 1263163..1263936(+) (codY) [Staphylococcus aureus strain 08S00974]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTTATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAG

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428