Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   LLJM4_RS10840 Genome accession   NZ_CP015909
Coordinates   2114525..2115463 (-) Length   312 a.a.
NCBI ID   WP_021165031.1    Uniprot ID   A0AAD1NII7
Organism   Lactococcus cremoris strain JM4     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2109525..2120463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLJM4_RS10810 (LLJM4_2109) frr 2109705..2110262 (-) 558 WP_134047474.1 ribosome recycling factor -
  LLJM4_RS10815 (LLJM4_2110) pyrH 2110418..2111134 (-) 717 WP_004254608.1 UMP kinase -
  LLJM4_RS10820 (LLJM4_04345) - 2111219..2111404 (-) 186 WP_311095615.1 hypothetical protein -
  LLJM4_RS10825 (LLJM4_04350) - 2111380..2111670 (-) 291 WP_311095616.1 hypothetical protein -
  LLJM4_RS10830 (LLJM4_2112) - 2111800..2112987 (-) 1188 WP_311095617.1 acetate kinase -
  LLJM4_RS10835 (LLJM4_2113) - 2113146..2114333 (-) 1188 WP_011677084.1 acetate kinase -
  LLJM4_RS10840 (LLJM4_2114) comYH 2114525..2115463 (-) 939 WP_021165031.1 class I SAM-dependent methyltransferase Machinery gene
  LLJM4_RS10845 (LLJM4_2115) - 2115551..2115802 (-) 252 WP_011677086.1 DUF3165 family protein -
  LLJM4_RS10850 (LLJM4_2116) typA 2115903..2117735 (-) 1833 WP_031286284.1 translational GTPase TypA -
  LLJM4_RS10860 (LLJM4_2119) - 2119424..2119612 (-) 189 Protein_2115 hypothetical protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34710.68 Da        Isoelectric Point: 4.3603

>NTDB_id=183425 LLJM4_RS10840 WP_021165031.1 2114525..2115463(-) (comYH) [Lactococcus cremoris strain JM4]
MNMEKVAQGFELVVENITKLSEKLDTDFYDAFVEQNAAFLDGTDQGIVELSVNNDKLRQLNLSNKEWQKLFQFVLLKGSQ
VAPLQANHAMTPDAIGLIFNFIIEHLNKNSELRLIEFGSGMGNLAETLLVNLNKKVDYVGFEVDDLLLDLSASMAEIMGS
YAEFMQIDAVQKRLMEPADVVVSDLPIGFYPDDEVSKNFEVAATDGHTFAHHLLIEQSFNYLKDGAFAVFLAPEDLLTSV
QGPLLKEWISQHGSIMAVITLPSSLFNADAKAIYVLKKGPAAHATFAHPLSSLTDRESLEIFMEEFTKTVKL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=183425 LLJM4_RS10840 WP_021165031.1 2114525..2115463(-) (comYH) [Lactococcus cremoris strain JM4]
ATGAACATGGAAAAAGTGGCTCAAGGTTTTGAGCTGGTAGTTGAAAATATTACAAAATTATCTGAGAAATTAGATACAGA
TTTTTATGATGCTTTTGTGGAACAAAATGCTGCTTTTTTAGATGGTACTGACCAAGGAATTGTTGAGCTGTCAGTAAATA
ATGACAAACTCCGTCAGTTAAATTTATCAAACAAAGAATGGCAAAAACTTTTTCAATTTGTTTTATTAAAAGGTTCGCAA
GTTGCGCCTCTTCAGGCAAATCATGCCATGACTCCTGATGCAATTGGTCTAATTTTCAACTTTATCATTGAACATCTCAA
TAAAAATTCTGAACTTCGATTAATTGAGTTTGGTTCTGGTATGGGTAATCTTGCGGAAACATTGCTTGTTAATCTTAATA
AAAAAGTAGATTATGTTGGTTTTGAAGTCGATGATTTACTTTTAGATTTGTCAGCTTCAATGGCTGAAATCATGGGAAGC
TATGCCGAATTTATGCAAATTGATGCGGTTCAAAAACGGTTGATGGAGCCAGCTGATGTTGTTGTTAGTGATTTGCCAAT
CGGTTTTTATCCAGATGATGAAGTTTCGAAAAATTTTGAAGTCGCTGCTACTGATGGACACACCTTTGCACATCATTTGT
TGATTGAACAATCATTTAATTACTTGAAAGATGGTGCTTTTGCAGTTTTCTTAGCACCGGAGGATTTACTGACAAGTGTA
CAAGGCCCACTTTTAAAAGAATGGATTAGTCAGCATGGAAGTATTATGGCGGTAATTACTTTACCAAGCTCACTTTTTAA
TGCTGATGCTAAAGCAATTTATGTCTTGAAAAAAGGGCCTGCTGCTCATGCGACCTTTGCTCATCCTTTGTCATCATTGA
CAGACAGAGAAAGTTTAGAAATCTTTATGGAAGAATTTACAAAAACTGTAAAGTTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

48.882

100

0.49
  comYH Streptococcus mutans UA159

48.562

100

0.487

Multiple sequence alignment