Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   LLUC08_RS10295 Genome accession   NZ_CP015903
Coordinates   2105472..2106410 (-) Length   312 a.a.
NCBI ID   WP_058207942.1    Uniprot ID   A0A9X4NCI1
Organism   Lactococcus lactis subsp. lactis strain UC08     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2100472..2111410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC08_RS10270 (LLUC08_1992) frr 2100590..2101147 (-) 558 WP_004254618.1 ribosome recycling factor -
  LLUC08_RS10275 (LLUC08_1993) pyrH 2101359..2102075 (-) 717 WP_004254608.1 UMP kinase -
  LLUC08_RS10280 (LLUC08_1994) - 2102160..2102612 (-) 453 WP_081200108.1 hypothetical protein -
  LLUC08_RS10285 (LLUC08_1995) - 2102746..2103933 (-) 1188 WP_015427114.1 acetate kinase -
  LLUC08_RS10290 (LLUC08_1996) - 2104090..2105277 (-) 1188 WP_058220691.1 acetate kinase -
  LLUC08_RS10295 (LLUC08_1997) comYH 2105472..2106410 (-) 939 WP_058207942.1 class I SAM-dependent methyltransferase Machinery gene
  LLUC08_RS10300 (LLUC08_1998) - 2106498..2106749 (-) 252 WP_004254583.1 DUF3165 family protein -
  LLUC08_RS10305 (LLUC08_1999) typA 2106851..2108683 (-) 1833 WP_025016832.1 translational GTPase TypA -
  LLUC08_RS10310 (LLUC08_2000) - 2108877..2109329 (-) 453 WP_081200284.1 hypothetical protein -
  LLUC08_RS10315 (LLUC08_2001) - 2109344..2110117 (-) 774 WP_012898522.1 hypothetical protein -
  LLUC08_RS10320 (LLUC08_2002) - 2110454..2111080 (-) 627 WP_081200110.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34764.92 Da        Isoelectric Point: 4.3717

>NTDB_id=183138 LLUC08_RS10295 WP_058207942.1 2105472..2106410(-) (comYH) [Lactococcus lactis subsp. lactis strain UC08]
MDMEKVAQGFELVVANIMLLSEKLDTDFYDAFVEQNAALLDDTDQGIVELSVNNDKLRQLNLSNKEWQKLFQFVLLKGSQ
VAPLQPNHAMTPDAIGLIFNFIIEHLNKNSELRLIEFGSGMGNLAETLLVNLNKKVDYVGFEVDDLLLDLSASMAEIMGS
QAEFMQIDAVQKRLMEPADVVVSDLPIGFYPDDEVAKNFEVATTDGHTFAHHLLIEQSFNYLKEGSFAIFLAPEDLLTSP
QGPLLKEWISKHGSVMAVITLPKSLFNADAKAIYVLKKGPAAHATFAHPLSSLTDRESLEVFMEEFTKIVKL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=183138 LLUC08_RS10295 WP_058207942.1 2105472..2106410(-) (comYH) [Lactococcus lactis subsp. lactis strain UC08]
ATGGATATGGAAAAAGTGGCTCAAGGTTTTGAGCTAGTTGTTGCAAATATTATGTTATTATCTGAGAAATTGGATACAGA
TTTTTATGATGCTTTTGTAGAACAAAATGCTGCTCTTTTAGATGATACTGACCAAGGAATTGTTGAATTGTCAGTAAATA
ATGACAAACTTCGTCAGTTAAATTTATCAAATAAGGAGTGGCAAAAACTTTTTCAATTTGTTTTGTTGAAAGGGTCACAA
GTCGCACCACTTCAGCCCAATCATGCAATGACTCCAGATGCAATTGGCTTAATTTTTAATTTCATTATTGAACATCTTAA
TAAAAATTCTGAACTTCGTTTAATTGAATTTGGGTCTGGTATGGGTAATCTTGCTGAAACGCTTTTAGTTAATCTTAATA
AAAAGGTTGATTATGTAGGCTTTGAAGTTGATGATTTACTTTTAGATTTGTCTGCTTCAATGGCTGAAATTATGGGGAGT
CAGGCTGAGTTCATGCAAATTGATGCAGTACAAAAGCGTTTGATGGAACCTGCAGACGTTGTTGTCAGTGATTTACCAAT
TGGTTTTTATCCGGATGATGAAGTTGCAAAGAATTTTGAAGTTGCGACTACTGACGGACATACTTTTGCTCATCATCTTT
TGATTGAGCAATCATTTAATTATTTAAAAGAGGGTTCTTTTGCCATTTTCCTAGCTCCAGAAGATTTACTGACAAGTCCT
CAAGGACCACTATTAAAGGAGTGGATTAGTAAACATGGAAGTGTGATGGCTGTCATCACTTTACCAAAATCACTTTTTAA
TGCTGATGCTAAGGCGATTTATGTTTTGAAAAAGGGACCGGCTGCACATGCAACTTTTGCTCACCCTTTGTCTTCACTGA
CAGACAGAGAAAGCTTAGAAGTCTTTATGGAAGAATTTACAAAAATTGTAAAATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

48.882

100

0.49
  comYH Streptococcus mutans UA159

48.562

100

0.487

Multiple sequence alignment