Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   LLUC06_RS11570 Genome accession   NZ_CP015902
Coordinates   2312924..2313862 (-) Length   312 a.a.
NCBI ID   WP_081213742.1    Uniprot ID   A0A1V0P4X3
Organism   Lactococcus lactis subsp. lactis strain UC06     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2307924..2318862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC06_RS11545 (LLUC06_2245) frr 2308041..2308598 (-) 558 WP_004254618.1 ribosome recycling factor -
  LLUC06_RS11550 (LLUC06_2246) pyrH 2308811..2309527 (-) 717 WP_021464089.1 UMP kinase -
  LLUC06_RS11555 (LLUC06_2247) - 2309612..2310064 (-) 453 WP_021464090.1 hypothetical protein -
  LLUC06_RS11560 (LLUC06_2248) - 2310198..2311385 (-) 1188 WP_058203737.1 acetate kinase -
  LLUC06_RS11565 (LLUC06_2249) - 2311542..2312729 (-) 1188 WP_004254593.1 acetate kinase -
  LLUC06_RS11570 (LLUC06_2250) comYH 2312924..2313862 (-) 939 WP_081213742.1 class I SAM-dependent methyltransferase Machinery gene
  LLUC06_RS11575 (LLUC06_2251) - 2313958..2314209 (-) 252 WP_004254583.1 DUF3165 family protein -
  LLUC06_RS11580 (LLUC06_2252) typA 2314310..2316142 (-) 1833 WP_025016832.1 translational GTPase TypA -
  LLUC06_RS11585 (LLUC06_2253) - 2316330..2316835 (-) 506 Protein_2251 hypothetical protein -
  LLUC06_RS11590 (LLUC06_2254) - 2316940..2317566 (-) 627 WP_058203734.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34889.06 Da        Isoelectric Point: 4.3720

>NTDB_id=183089 LLUC06_RS11570 WP_081213742.1 2312924..2313862(-) (comYH) [Lactococcus lactis subsp. lactis strain UC06]
MDMEKVAQGFELVVANIMLLSEKLDTDFYDAFVEQNAAFLDDTDQGIVELSVNNDKLRQLNLSNKEWQKLFQFVLLKGSQ
VAPLQPNHAMTPDAIGLIFNFIIEHLNKNSELRLIEFGSGMGNLAETLLVNLNKKVDYVGFEVDDLLLDLSASMAEIMRS
QAEFMQIDAVQKRLMEPADVVVSDLPIGFYPDDEVAKNFEVATTDGHTFAHQLLIEQSFNYLKEGSFAIFLAPEDLLTSP
QGPLLKEWISKHGSVMAVITLPKSLFNADAKAIYVLKKGPAAHATFAHPLSSLTDRESLEVFMEEFTKIVKL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=183089 LLUC06_RS11570 WP_081213742.1 2312924..2313862(-) (comYH) [Lactococcus lactis subsp. lactis strain UC06]
ATGGATATGGAAAAAGTGGCTCAAGGTTTTGAGCTAGTTGTTGCAAATATTATGTTATTATCTGAGAAATTGGATACAGA
TTTTTATGATGCTTTTGTAGAACAAAATGCTGCTTTTTTAGATGATACTGACCAAGGAATTGTTGAATTGTCAGTAAATA
ATGACAAACTTCGTCAGTTAAATTTATCAAATAAGGAGTGGCAAAAACTTTTTCAATTTGTTCTGTTGAAAGGATCACAA
GTCGCACCACTTCAGCCCAATCATGCAATGACTCCAGATGCAATTGGTTTAATTTTTAATTTCATTATTGAACATCTTAA
TAAAAATTCTGAACTTCGTTTAATTGAATTTGGGTCTGGTATGGGTAATCTTGCTGAAACGCTTTTGGTTAATCTTAATA
AAAAGGTTGATTATGTAGGCTTTGAAGTTGATGATTTACTTTTAGATTTGTCTGCTTCAATGGCTGAAATTATGAGGAGT
CAGGCTGAGTTCATGCAAATTGATGCAGTACAAAAGCGTTTGATGGAACCTGCAGACGTTGTTGTCAGTGATTTACCAAT
TGGTTTTTATCCGGATGATGAAGTTGCAAAGAATTTTGAAGTTGCGACTACTGACGGACATACTTTTGCTCATCAGCTTT
TGATTGAGCAATCATTTAATTATTTAAAAGAGGGTTCTTTTGCCATTTTCCTAGCTCCAGAAGATTTACTGACAAGTCCT
CAAGGACCACTATTAAAGGAGTGGATTAGTAAACATGGAAGTGTGATGGCTGTCATCACTTTACCAAAATCACTTTTTAA
TGCTGATGCTAAGGCGATTTATGTTTTGAAAAAGGGGCCGGCTGCACATGCAACTTTTGCTCACCCTTTGTCTTCACTGA
CAGACAGAGAAAGTTTAGAAGTCTTTATGGAAGAATTTACAAAAATTGTAAAATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V0P4X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

48.562

100

0.487
  comYH Streptococcus mutans UA159

48.243

100

0.484

Multiple sequence alignment