Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LLUC06_RS01205 Genome accession   NZ_CP015902
Coordinates   224227..225015 (+) Length   262 a.a.
NCBI ID   WP_003129722.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain UC06     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 219227..230015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC06_RS01180 (LLUC06_0219) - 219595..220386 (+) 792 WP_031559092.1 DNA/RNA non-specific endonuclease -
  LLUC06_RS01185 (LLUC06_0220) - 220551..220760 (+) 210 WP_010905160.1 hypothetical protein -
  LLUC06_RS01190 (LLUC06_0221) - 220772..221011 (+) 240 WP_081213311.1 hypothetical protein -
  LLUC06_RS01195 (LLUC06_0222) - 221208..222791 (+) 1584 WP_081213312.1 APC family permease -
  LLUC06_RS01200 (LLUC06_0223) - 222860..224074 (+) 1215 WP_081213313.1 pyridoxal phosphate-dependent aminotransferase -
  LLUC06_RS01205 (LLUC06_0224) codY 224227..225015 (+) 789 WP_003129722.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LLUC06_RS01210 (LLUC06_0225) gatC 225580..225885 (+) 306 WP_010905163.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  LLUC06_RS01215 (LLUC06_0226) gatA 225885..227345 (+) 1461 WP_081213314.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  LLUC06_RS01220 (LLUC06_0227) - 227349..227951 (+) 603 WP_058217152.1 NUDIX hydrolase N-terminal domain-containing protein -
  LLUC06_RS01225 (LLUC06_0228) gatB 227991..229424 (+) 1434 WP_081213315.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29128.46 Da        Isoelectric Point: 4.5254

>NTDB_id=183054 LLUC06_RS01205 WP_003129722.1 224227..225015(+) (codY) [Lactococcus lactis subsp. lactis strain UC06]
MATLLEKTRKITAILQDGVTDLQQELPYNSMTERLANVIDCNACVINTKGELLGYSLPYNTNNDRVDQFFYDRKLPDEYV
RAAVRIYDTMANVPVDRPLAIFPEESLGDFPKGVTTLAPIYGSGMRLGTFIMWREDGEFTDDDLVLVELATTVIGVQLSN
LKLEQMEENIRKDTMATMAVNTLSYSEMKAVKAIIEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGVIESRSLG
MKGTYLKVLNTGLFDKLAGRNF

Nucleotide


Download         Length: 789 bp        

>NTDB_id=183054 LLUC06_RS01205 WP_003129722.1 224227..225015(+) (codY) [Lactococcus lactis subsp. lactis strain UC06]
GTGGCTACATTACTTGAAAAAACACGTAAAATCACCGCGATTTTGCAAGATGGAGTGACCGATTTGCAACAAGAGTTGCC
ATATAACAGTATGACTGAACGCTTGGCAAACGTCATTGATTGCAATGCATGTGTGATTAATACGAAGGGCGAGTTGCTTG
GTTACTCATTGCCTTATAATACAAACAATGACCGTGTTGACCAATTTTTCTATGATCGTAAATTGCCTGATGAATATGTT
CGTGCGGCAGTACGTATCTACGATACAATGGCAAACGTTCCTGTTGACCGTCCATTAGCAATTTTCCCAGAAGAAAGCCT
TGGCGATTTTCCAAAAGGTGTGACAACTTTAGCACCTATTTATGGTTCTGGAATGCGTTTGGGAACATTTATCATGTGGC
GTGAAGACGGCGAATTCACTGATGATGATTTGGTCTTAGTTGAACTTGCAACAACAGTAATTGGTGTTCAACTCTCAAAT
CTTAAACTTGAACAAATGGAAGAAAATATCCGTAAAGACACCATGGCAACTATGGCTGTTAACACACTTTCATATTCAGA
AATGAAAGCTGTTAAAGCAATCATTGAAGAGCTTGATGGTGAAGAAGGGCATGTTATCGCTTCTGTCATTGCTGACAAGA
TTGGGATTACACGTTCAGTCATCGTTAACGCATTGCGTAAACTCGAATCTGCTGGTGTAATTGAATCACGTTCACTTGGT
ATGAAAGGAACTTATCTTAAAGTTCTTAATACTGGTTTATTTGATAAACTTGCAGGACGTAATTTCTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(201-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

100

100

1
  codY Bacillus subtilis subsp. subtilis str. 168

47.638

96.947

0.462

Multiple sequence alignment