Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LLJM3_RS00870 Genome accession   NZ_CP015901
Coordinates   167833..168621 (+) Length   262 a.a.
NCBI ID   WP_011675220.1    Uniprot ID   A0AA34THE9
Organism   Lactococcus cremoris strain JM3     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 162833..173621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLJM3_RS00850 (LLJM3_0156) - 163149..163934 (+) 786 WP_014571883.1 DNA/RNA non-specific endonuclease -
  LLJM3_RS00855 (LLJM3_0157) - 164319..164558 (+) 240 WP_011675217.1 hypothetical protein -
  LLJM3_RS00860 (LLJM3_0158) - 164756..166336 (+) 1581 WP_011675218.1 glycosyl transferase -
  LLJM3_RS00865 (LLJM3_0159) - 166466..167680 (+) 1215 WP_011675219.1 pyridoxal phosphate-dependent aminotransferase -
  LLJM3_RS00870 (LLJM3_0160) codY 167833..168621 (+) 789 WP_011675220.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LLJM3_RS00875 (LLJM3_0161) gatC 168899..169204 (+) 306 WP_011675221.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  LLJM3_RS00880 (LLJM3_0162) gatA 169204..170664 (+) 1461 WP_011675222.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  LLJM3_RS00885 (LLJM3_0163) gatB 170689..172122 (+) 1434 WP_011675223.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29144.46 Da        Isoelectric Point: 4.5254

>NTDB_id=183007 LLJM3_RS00870 WP_011675220.1 167833..168621(+) (codY) [Lactococcus cremoris strain JM3]
MATLLEKTRKITAILQDGVTDLQQELPYNSMTERLANVIDCNACVINTKGELLGYSLPYNTNNDRVDQFFYDRKLPDEYV
RAAVRVYDTMANVPVDRPLAIFPEESLSDFPKGVTTLAPIYGSGMRLGTFIMWREDGEFTDDDLVLVELATTVIGVQLSN
LKLEQMEENIRKDTMATMAVNTLSYSEMKAVKAIIEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGVIESRSLG
MKGTYLKVLNTGLFDKLAGRNF

Nucleotide


Download         Length: 789 bp        

>NTDB_id=183007 LLJM3_RS00870 WP_011675220.1 167833..168621(+) (codY) [Lactococcus cremoris strain JM3]
GTGGCTACATTACTTGAAAAAACACGTAAAATCACCGCGATTTTGCAAGATGGAGTGACCGATTTGCAACAAGAGTTGCC
ATACAACAGTATGACTGAACGCTTGGCAAACGTCATTGATTGCAACGCCTGCGTGATTAATACGAAGGGCGAGTTGCTTG
GTTACTCATTGCCTTACAATACAAACAATGATCGCGTTGACCAATTTTTCTACGATCGTAAATTGCCTGACGAATACGTT
CGTGCAGCAGTACGTGTTTACGATACAATGGCAAACGTTCCTGTTGATCGTCCTTTAGCAATTTTCCCAGAAGAAAGTCT
TAGCGATTTTCCAAAAGGTGTAACAACTTTAGCGCCTATCTATGGTTCTGGAATGCGTCTTGGAACATTTATTATGTGGC
GCGAAGATGGTGAATTTACAGATGACGATCTTGTTTTGGTTGAGCTTGCAACAACAGTAATCGGTGTACAACTCTCAAAC
CTTAAACTTGAACAAATGGAAGAAAATATCCGTAAAGACACTATGGCAACAATGGCTGTTAATACACTTTCTTACTCAGA
AATGAAAGCTGTCAAAGCAATTATTGAAGAACTTGATGGTGAAGAAGGGCATGTTATTGCCTCTGTCATTGCTGACAAGA
TTGGTATTACACGTTCAGTGATTGTTAATGCTTTACGTAAACTGGAATCTGCTGGTGTTATTGAATCACGTTCACTTGGT
ATGAAAGGAACTTATCTTAAAGTTCTTAATACTGGTTTGTTTGATAAACTTGCTGGACGTAATTTCTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(201-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

99.237

100

0.992
  codY Bacillus subtilis subsp. subtilis str. 168

48.031

96.947

0.466

Multiple sequence alignment