Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   LL158_RS09980 Genome accession   NZ_CP015894
Coordinates   1974297..1975235 (-) Length   312 a.a.
NCBI ID   WP_081172507.1    Uniprot ID   A0AAJ6MK37
Organism   Lactococcus cremoris strain 158     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1969297..1980235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL158_RS09955 (LL158_1918) frr 1969476..1970033 (-) 558 WP_011677081.1 ribosome recycling factor -
  LL158_RS09960 (LL158_1919) pyrH 1970189..1970905 (-) 717 WP_004254608.1 UMP kinase -
  LL158_RS09965 (LL158_1920) - 1970990..1971442 (-) 453 WP_011677082.1 hypothetical protein -
  LL158_RS09970 (LL158_1921) - 1971572..1972759 (-) 1188 WP_015082877.1 acetate kinase -
  LL158_RS09975 (LL158_1922) - 1972918..1974105 (-) 1188 WP_011677084.1 acetate kinase -
  LL158_RS09980 (LL158_1923) comYH 1974297..1975235 (-) 939 WP_081172507.1 class I SAM-dependent methyltransferase Machinery gene
  LL158_RS09985 (LL158_1924) - 1975323..1975574 (-) 252 WP_011677086.1 DUF3165 family protein -
  LL158_RS09990 (LL158_1925) typA 1975675..1977507 (-) 1833 WP_031286284.1 translational GTPase TypA -
  LL158_RS12830 - 1977684..1978157 (-) 474 WP_015082879.1 hypothetical protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34766.75 Da        Isoelectric Point: 4.3323

>NTDB_id=182844 LL158_RS09980 WP_081172507.1 1974297..1975235(-) (comYH) [Lactococcus cremoris strain 158]
MNMEKVAQGFELVVENITKLSEKLDTDFYDAFVEQNAAFLDGTDQEIVELSVNNDKLRQLNLSNKEWQKLFQFVLLKGSQ
VAPLQANHAMTPDAIGLIFNFIIEHLNKNSELRLIEFGSGMGNLAETLLVNLNKKVDYVGFEVDDLLLDLSASMAEIMGS
YAEFMQIDAVQKRLMEPADVVVSDLPIGFYPDDEVAKNFEVAATDGHTFAHHLLIEQSFNYLKDGAFAVFLAPEDLLTSV
QGPLLKEWISQHGSIMAVITLPSSLFNADAKAIYVLKKGPAAHATFAHPLSSLTDRESLEIFMEEFTKTVKL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=182844 LL158_RS09980 WP_081172507.1 1974297..1975235(-) (comYH) [Lactococcus cremoris strain 158]
ATGAACATGGAAAAAGTGGCTCAAGGTTTTGAGCTGGTAGTTGAAAATATTACAAAATTATCTGAGAAATTAGATACAGA
TTTTTATGATGCTTTTGTGGAACAAAATGCTGCTTTTTTAGATGGTACTGACCAAGAAATTGTTGAGCTGTCAGTAAATA
ATGACAAACTCCGTCAGTTAAATTTATCAAATAAAGAATGGCAAAAACTTTTTCAATTTGTTTTATTAAAAGGTTCGCAA
GTTGCGCCTCTTCAGGCAAATCATGCCATGACTCCTGATGCAATTGGTCTAATTTTCAACTTTATCATTGAACATCTCAA
TAAAAATTCTGAACTTCGATTAATTGAGTTTGGTTCTGGTATGGGTAATCTTGCGGAAACATTGCTTGTTAATCTTAATA
AAAAAGTAGATTATGTTGGTTTTGAAGTCGATGATTTACTTTTAGATTTGTCAGCTTCAATGGCTGAAATCATGGGAAGC
TATGCCGAATTTATGCAAATTGATGCGGTTCAAAAACGGTTGATGGAGCCAGCTGATGTTGTTGTTAGTGATTTGCCAAT
CGGTTTTTATCCAGATGATGAAGTTGCGAAAAATTTTGAAGTCGCTGCTACTGATGGACACACCTTTGCACATCATTTGT
TGATTGAACAATCATTTAATTACTTGAAAGATGGTGCTTTTGCAGTTTTCTTAGCACCGGAGGATTTACTGACAAGTGTA
CAAGGCCCACTTTTAAAAGAATGGATTAGTCAGCATGGAAGTATTATGGCGGTAATTACTTTACCAAGCTCACTTTTTAA
TGCTGATGCTAAAGCAATTTATGTCTTGAAAAAAGGGCCTGCTGCTCATGCGACCTTTGCTCATCCTTTGTCATCATTGA
CAGACAGAGAAAGTTTAGAAATCTTTATGGAAGAATTTACAAAAACTGTAAAGTTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

49.201

100

0.494
  comYH Streptococcus mutans UA159

48.882

100

0.49

Multiple sequence alignment