Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LL158_RS00820 Genome accession   NZ_CP015894
Coordinates   159303..160091 (+) Length   262 a.a.
NCBI ID   WP_081213170.1    Uniprot ID   -
Organism   Lactococcus cremoris strain 158     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 154303..165091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL158_RS00795 (LL158_0146) - 154615..155400 (+) 786 WP_015081895.1 DNA/RNA non-specific endonuclease -
  LL158_RS00800 (LL158_0147) - 155569..155778 (+) 210 WP_014571884.1 hypothetical protein -
  LL158_RS00805 (LL158_0148) - 155790..156029 (+) 240 WP_015081896.1 hypothetical protein -
  LL158_RS00810 (LL158_0149) - 156227..157807 (+) 1581 WP_015081897.1 heme/copper-type cytochrome/quinol oxidase subunit 1 -
  LL158_RS00815 (LL158_0150) - 157937..159151 (+) 1215 WP_011675219.1 pyridoxal phosphate-dependent aminotransferase -
  LL158_RS00820 (LL158_0151) codY 159303..160091 (+) 789 WP_081213170.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LL158_RS00825 (LL158_0152) gatC 160369..160674 (+) 306 WP_011675221.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  LL158_RS00830 (LL158_0153) gatA 160674..162134 (+) 1461 WP_015081899.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  LL158_RS00835 (LL158_0154) gatB 162159..163592 (+) 1434 WP_011675223.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29143.42 Da        Isoelectric Point: 4.5248

>NTDB_id=182811 LL158_RS00820 WP_081213170.1 159303..160091(+) (codY) [Lactococcus cremoris strain 158]
MATLLEKTRKITAILQDGVTDLQQELPYNSMTERLANVIDCNACVINTKGELLGYSLPYNTNNDRVDQFFYDRKLPDEYV
RAAVRIYDTMANVPVDRPLAIFPEESLSDFPKGVTTLATIYGSGMHLGTFIMWREDGEFTDDDLVLVELATTVIGVQLSN
LKLEQMEENIRKDTMATMAVNTLSYSEMKAVKAIIEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGVIESRSLG
MKGTYLKVLNTGLFDKLAGRNF

Nucleotide


Download         Length: 789 bp        

>NTDB_id=182811 LL158_RS00820 WP_081213170.1 159303..160091(+) (codY) [Lactococcus cremoris strain 158]
GTGGCTACATTACTTGAAAAAACACGTAAAATCACCGCGATTTTGCAAGATGGAGTGACCGATTTGCAACAAGAGTTGCC
ATACAACAGTATGACTGAACGCTTGGCAAACGTCATTGATTGCAACGCCTGCGTGATTAATACGAAGGGCGAGTTGCTTG
GTTACTCATTGCCTTACAATACAAACAATGATCGCGTTGACCAATTTTTCTACGATCGTAAATTGCCTGACGAATACGTT
CGTGCAGCAGTACGTATTTACGATACAATGGCAAACGTTCCTGTTGATCGTCCTTTAGCAATTTTCCCAGAAGAAAGTCT
TAGCGATTTTCCAAAAGGTGTAACAACTTTAGCGACTATCTATGGTTCTGGAATGCATCTTGGAACATTTATTATGTGGC
GCGAAGATGGTGAATTTACAGATGACGATCTTGTTTTGGTTGAGCTTGCAACAACAGTAATCGGTGTACAACTCTCAAAC
CTTAAACTTGAACAAATGGAAGAAAATATCCGTAAAGACACTATGGCAACAATGGCTGTTAATACACTTTCTTACTCAGA
AATGAAAGCTGTCAAAGCAATTATTGAAGAACTTGATGGTGAAGAAGGGCATGTTATTGCCTCTGTCATTGCTGACAAGA
TTGGTATTACACGTTCAGTGATTGTTAATGCTTTACGTAAACTTGAATCTGCTGGTGTTATTGAATCACGTTCACTTGGT
ATGAAAGGAACTTATCTTAAAGTTCTTAATACTGGTTTGTTTGATAAACTTGCTGGACGTAATTTCTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(201-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

98.855

100

0.989
  codY Bacillus subtilis subsp. subtilis str. 168

46.85

96.947

0.454

Multiple sequence alignment