Detailed information NTG0182669

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: A214_RS10280
• Genome accession: NZ_CP015877
• Coordinates: 2223119..2223991 (-)
• Length: 290 a.a.
• NCBI ID: WP_017148550.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa SJTD-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2218119..2228991

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A214_RS10235 (A214_10235)	-	2218980..2219150 (-)	171	WP_003094672.1	DUF3094 family protein	-
A214_RS10240 (A214_10240)	-	2219176..2219625 (-)	450	WP_003161439.1	MOSC domain-containing protein	-
A214_RS10245 (A214_10245)	-	2219622..2220251 (-)	630	WP_003094668.1	DUF1780 domain-containing protein	-
A214_RS10250 (A214_10250)	-	2220384..2220809 (+)	426	WP_003103865.1	GNAT family N-acetyltransferase	-
A214_RS10255 (A214_10255)	-	2220806..2221276 (+)	471	WP_017148552.1	hypothetical protein	-
A214_RS10260 (A214_10260)	-	2221273..2221962 (+)	690	WP_003094662.1	energy-coupling factor ABC transporter permease	-
A214_RS10265 (A214_10265)	-	2222068..2222277 (+)	210	WP_003094660.1	hypothetical protein	-
A214_RS10270 (A214_10270)	yacG	2222314..2222514 (-)	201	WP_017148551.1	DNA gyrase inhibitor YacG	-
A214_RS10275 (A214_10275)	coaE	2222511..2223122 (-)	612	WP_003094654.1	dephospho-CoA kinase	-
A214_RS10280 (A214_10280)	pilD	2223119..2223991 (-)	873	WP_017148550.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
A214_RS10285 (A214_10285)	pilC	2223994..2225211 (-)	1218	WP_023103506.1	type II secretion system F family protein	Machinery gene
A214_RS10290 (A214_10290)	pilB	2225215..2226918 (-)	1704	WP_023100230.1	type IV-A pilus assembly ATPase PilB	Machinery gene
A214_RS28815	pilE	2227145..2227681 (+)	537	WP_025921208.1	pilin	Machinery gene
A214_RS29560	tfpZ	2227746..2228483 (+)	738	WP_023110409.1	TfpX/TfpZ family type IV pilin accessory protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31888.88 Da
• Isoelectric Point: 7.7068

>NTDB_id=182669 A214_RS10280 WP_017148550.1 2223119..2223991(-) (pilD) [Pseudomonas aeruginosa SJTD-1]
MQLTDYLASHPLAFVLCTILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=182669 A214_RS10280 WP_017148550.1 2223119..2223991(-) (pilD) [Pseudomonas aeruginosa SJTD-1]
ATGCAACTCACAGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCACCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.357	96.552	0.534
pilD	Vibrio campbellii strain DS40M4	53.791	95.517	0.514
pilD	Acinetobacter nosocomialis M2	51.071	96.552	0.493
pilD	Acinetobacter baumannii D1279779	51.071	96.552	0.493
pilD	Neisseria gonorrhoeae MS11	48.571	96.552	0.469