Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   AOZ05_RS06950 Genome accession   NZ_CP019945
Coordinates   1319840..1320613 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain BA01611     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1314840..1325613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOZ05_RS06930 trmFO 1315184..1316491 (+) 1308 WP_000195260.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  AOZ05_RS06935 xerC 1316908..1317804 (+) 897 WP_001015597.1 tyrosine recombinase XerC -
  AOZ05_RS06940 hslV 1317801..1318346 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  AOZ05_RS06945 hslU 1318412..1319815 (+) 1404 WP_000379049.1 ATP-dependent protease ATPase subunit HslU -
  AOZ05_RS06950 codY 1319840..1320613 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  AOZ05_RS06955 - 1320656..1320760 (+) 105 WP_031774985.1 hypothetical protein -
  AOZ05_RS06960 rpsB 1320959..1321726 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  AOZ05_RS06965 - 1321760..1321873 (+) 114 WP_001789890.1 hypothetical protein -
  AOZ05_RS06970 tsf 1321908..1322789 (+) 882 WP_000201387.1 translation elongation factor Ts -
  AOZ05_RS06975 pyrH 1322926..1323648 (+) 723 WP_000057330.1 UMP kinase -
  AOZ05_RS06980 frr 1323667..1324221 (+) 555 WP_001280006.1 ribosome recycling factor -
  AOZ05_RS06985 - 1324594..1325364 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=182420 AOZ05_RS06950 WP_000055337.1 1319840..1320613(+) (codY) [Staphylococcus aureus strain BA01611]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=182420 AOZ05_RS06950 WP_000055337.1 1319840..1320613(+) (codY) [Staphylococcus aureus strain BA01611]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428