Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   BSA171_RS11715 Genome accession   NZ_CP015611
Coordinates   2262547..2263326 (-) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus safensis strain U17-1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2257547..2268326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSA171_RS11685 (BSA171_11505) fliH 2257661..2258425 (-) 765 WP_041084863.1 flagellar assembly protein FliH -
  BSA171_RS11690 (BSA171_11510) fliG 2258418..2259434 (-) 1017 WP_034281776.1 flagellar motor switch protein FliG -
  BSA171_RS11695 (BSA171_11515) fliF 2259446..2261038 (-) 1593 WP_039178517.1 flagellar basal-body MS-ring/collar protein FliF -
  BSA171_RS11700 (BSA171_11520) fliE 2261088..2261405 (-) 318 WP_039178515.1 flagellar hook-basal body complex protein FliE -
  BSA171_RS11705 (BSA171_11525) flgC 2261417..2261869 (-) 453 WP_024424179.1 flagellar basal body rod protein FlgC -
  BSA171_RS11710 (BSA171_11530) flgB 2261869..2262258 (-) 390 WP_039178512.1 flagellar basal body rod protein FlgB -
  BSA171_RS11715 (BSA171_11535) codY 2262547..2263326 (-) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  BSA171_RS11720 (BSA171_11540) hslU 2263361..2264761 (-) 1401 WP_024424180.1 HslU--HslV peptidase ATPase subunit -
  BSA171_RS11725 (BSA171_11545) hslV 2264778..2265323 (-) 546 WP_024424181.1 ATP-dependent protease subunit HslV -
  BSA171_RS11730 (BSA171_11550) xerC 2265338..2266255 (-) 918 WP_041084864.1 tyrosine recombinase XerC -
  BSA171_RS11735 (BSA171_11555) trmFO 2266318..2267622 (-) 1305 WP_024424183.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=181454 BSA171_RS11715 WP_007499612.1 2262547..2263326(-) (codY) [Bacillus safensis strain U17-1]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=181454 BSA171_RS11715 WP_007499612.1 2262547..2263326(-) (codY) [Bacillus safensis strain U17-1]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTCAAAGAAAT
GGCAGAAACACTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGAAAGCTTCTTGGCTACTCCATTA
ATCAACAGATCGAAAATGCACGTATGAAAAAAATGCTTGAAGATCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTC
AATGTCCCAGAAACGTCTTCAAACCTTGATATTAACAGTGAATATACAGCTTTCCCGATTGAGAACCGTGACTTATTCCA
ATCAGGTTTAACAACAATTGTTCCAATTATCGGCGGAGGAGATCGTTTAGGTACGTTAATCCTGTCCCGCTTACAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGGGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCAGAG
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTCCAAATGGCGATTAGCTCTCTTTCATACAGTGAGCTTGAAGCGAT
TGAACACATTTTTGAAGAGCTTGATGGAAACGAAGGTCTTCTTGTCGCAAGTAAAATTGCAGACCGTGTAGGGATCACTC
GATCAGTGATCGTAAACGCCTTACGTAAGTTAGAAAGTGCAGGCGTAATCGAATCTCGTTCTCTTGGAATGAAGGGAACG
TACATCAAAGTGTTAAATAACAAATTTTTAATTGAACTCGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment