Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   BSA41_RS06350 Genome accession   NZ_CP015610
Coordinates   1194315..1195094 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus safensis strain U41     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1189315..1200094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSA41_RS06330 (BSA41_06160) trmFO 1190019..1191323 (+) 1305 WP_024424183.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  BSA41_RS06335 (BSA41_06165) xerC 1191386..1192303 (+) 918 WP_041084864.1 tyrosine recombinase XerC -
  BSA41_RS06340 (BSA41_06170) hslV 1192318..1192863 (+) 546 WP_024424181.1 ATP-dependent protease subunit HslV -
  BSA41_RS06345 (BSA41_06175) hslU 1192880..1194280 (+) 1401 WP_024424180.1 HslU--HslV peptidase ATPase subunit -
  BSA41_RS06350 (BSA41_06180) codY 1194315..1195094 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  BSA41_RS06355 (BSA41_06185) flgB 1195383..1195772 (+) 390 WP_039178512.1 flagellar basal body rod protein FlgB -
  BSA41_RS06360 (BSA41_06190) flgC 1195772..1196224 (+) 453 WP_024424179.1 flagellar basal body rod protein FlgC -
  BSA41_RS06365 (BSA41_06195) fliE 1196236..1196553 (+) 318 WP_039178515.1 flagellar hook-basal body complex protein FliE -
  BSA41_RS06370 (BSA41_06200) fliF 1196603..1198195 (+) 1593 WP_039178517.1 flagellar basal-body MS-ring/collar protein FliF -
  BSA41_RS06375 (BSA41_06205) fliG 1198207..1199223 (+) 1017 WP_034281776.1 flagellar motor switch protein FliG -
  BSA41_RS06380 (BSA41_06210) fliH 1199216..1199980 (+) 765 WP_041084863.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=181379 BSA41_RS06350 WP_007499612.1 1194315..1195094(+) (codY) [Bacillus safensis strain U41]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=181379 BSA41_RS06350 WP_007499612.1 1194315..1195094(+) (codY) [Bacillus safensis strain U41]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTCAAAGAAAT
GGCAGAAACACTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGAAAGCTTCTTGGCTACTCCATTA
ATCAACAGATCGAAAATGCACGTATGAAAAAAATGCTTGAAGATCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTC
AATGTCCCAGAAACGTCTTCAAACCTTGATATTAACAGTGAATATACAGCTTTCCCGATTGAGAACCGTGACTTATTCCA
ATCAGGTTTAACAACAATTGTTCCAATTATCGGCGGAGGAGATCGTTTAGGTACGTTAATCCTGTCCCGCTTACAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGGGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCAGAG
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTCCAAATGGCGATTAGCTCTCTTTCATACAGTGAGCTTGAAGCGAT
TGAACACATTTTTGAAGAGCTTGATGGAAACGAAGGTCTTCTTGTCGCAAGTAAAATTGCAGACCGTGTAGGGATCACTC
GATCAGTGATCGTAAACGCCTTACGTAAGTTAGAAAGTGCAGGCGTAATCGAATCTCGTTCTCTTGGAATGAAGGGAACG
TACATCAAAGTGTTAAATAACAAATTTTTAATTGAACTCGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment