Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   BSA145_RS16180 Genome accession   NZ_CP015607
Coordinates   3096733..3097512 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus safensis strain U14-5     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3091733..3102512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSA145_RS16160 (BSA145_15820) trmFO 3092437..3093741 (+) 1305 WP_024424183.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  BSA145_RS16165 (BSA145_15825) xerC 3093804..3094721 (+) 918 WP_048239697.1 tyrosine recombinase XerC -
  BSA145_RS16170 (BSA145_15830) hslV 3094736..3095281 (+) 546 WP_024424181.1 ATP-dependent protease subunit HslV -
  BSA145_RS16175 (BSA145_15835) hslU 3095298..3096698 (+) 1401 WP_075623029.1 HslU--HslV peptidase ATPase subunit -
  BSA145_RS16180 (BSA145_15840) codY 3096733..3097512 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  BSA145_RS16185 (BSA145_15845) flgB 3097800..3098189 (+) 390 WP_075623030.1 flagellar basal body rod protein FlgB -
  BSA145_RS16190 (BSA145_15850) flgC 3098189..3098641 (+) 453 WP_075623031.1 flagellar basal body rod protein FlgC -
  BSA145_RS16195 (BSA145_15855) fliE 3098653..3098970 (+) 318 WP_039178515.1 flagellar hook-basal body complex protein FliE -
  BSA145_RS16200 (BSA145_15860) fliF 3099020..3100612 (+) 1593 WP_024424177.1 flagellar basal-body MS-ring/collar protein FliF -
  BSA145_RS16205 (BSA145_15865) fliG 3100624..3101640 (+) 1017 WP_024424176.1 flagellar motor switch protein FliG -
  BSA145_RS16210 (BSA145_15870) fliH 3101633..3102397 (+) 765 WP_075623032.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=181346 BSA145_RS16180 WP_007499612.1 3096733..3097512(+) (codY) [Bacillus safensis strain U14-5]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=181346 BSA145_RS16180 WP_007499612.1 3096733..3097512(+) (codY) [Bacillus safensis strain U14-5]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTTAAAGAAAT
GGCAGAAACACTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGGGGAAAGCTTCTTGGCTACTCCATTA
ATCAACAGATCGAAAATGCACGTATGAAAAAAATGCTTGAAGATCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTC
AATGTCCCTGAAACGTCTTCAAACCTTGATATTAACAGTGAATATACAGCTTTCCCGATTGAGAACCGTGACTTATTCCA
ATCAGGCTTAACAACAATTGTCCCAATTATCGGCGGAGGAGATCGTTTAGGTACGTTAATCCTGTCCCGTTTGCAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGGGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCAGAG
GAAATCGAAGAAGAAGCAAGAAGTAAAGCGGTTGTCCAAATGGCGATTAGCTCCCTTTCATATAGTGAGCTTGAAGCGAT
TGAGCACATTTTTGAAGAGCTTGATGGAAACGAAGGTCTTCTTGTCGCAAGTAAAATTGCAGACCGTGTAGGGATTACTC
GTTCAGTCATCGTAAACGCCTTACGTAAGTTAGAAAGTGCAGGCGTAATCGAATCTCGTTCGCTTGGAATGAAGGGAACG
TACATCAAAGTGTTAAACAACAAATTTTTAATTGAACTCGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment