Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   BZJ79_RS06230 Genome accession   NZ_CP019592
Coordinates   1240557..1241330 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain GD5     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1235557..1246330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BZJ79_RS06210 (BZJ79_06220) trmFO 1235901..1237208 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  BZJ79_RS06215 (BZJ79_06225) xerC 1237625..1238521 (+) 897 WP_001015606.1 tyrosine recombinase XerC -
  BZJ79_RS06220 (BZJ79_06230) hslV 1238518..1239063 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  BZJ79_RS06225 (BZJ79_06235) hslU 1239129..1240532 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  BZJ79_RS06230 (BZJ79_06240) codY 1240557..1241330 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  BZJ79_RS06235 (BZJ79_06245) - 1241381..1241473 (+) 93 WP_001790530.1 hypothetical protein -
  BZJ79_RS06240 (BZJ79_06250) rpsB 1241672..1242439 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  BZJ79_RS06245 (BZJ79_06255) - 1242473..1242585 (+) 113 Protein_1160 hypothetical protein -
  BZJ79_RS06250 (BZJ79_06260) tsf 1242620..1243501 (+) 882 WP_000201387.1 translation elongation factor Ts -
  BZJ79_RS06255 (BZJ79_06265) pyrH 1243638..1244360 (+) 723 WP_000057330.1 UMP kinase -
  BZJ79_RS06260 (BZJ79_06270) frr 1244379..1244933 (+) 555 WP_001280006.1 ribosome recycling factor -
  BZJ79_RS06265 (BZJ79_06275) - 1245306..1246076 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=181301 BZJ79_RS06230 WP_000055337.1 1240557..1241330(+) (codY) [Staphylococcus aureus strain GD5]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=181301 BZJ79_RS06230 WP_000055337.1 1240557..1241330(+) (codY) [Staphylococcus aureus strain GD5]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTTATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAG

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428

Multiple sequence alignment