Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BSA145_RS00820 Genome accession   NZ_CP015607
Coordinates   132185..132475 (+) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus safensis strain U14-5     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 127185..137475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSA145_RS00805 (BSA145_00790) - 127369..128571 (-) 1203 WP_075621329.1 G5 and 3D domain-containing protein -
  BSA145_RS00810 (BSA145_00795) - 128816..129583 (-) 768 WP_075621330.1 TatD family hydrolase -
  BSA145_RS00815 (BSA145_00800) metG 129664..131664 (-) 2001 WP_075621331.1 methionine--tRNA ligase -
  BSA145_RS00820 (BSA145_00805) abrB 132185..132475 (+) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BSA145_RS00825 (BSA145_00810) rsmI 132521..133402 (-) 882 WP_024425632.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  BSA145_RS00830 (BSA145_00815) - 133377..133676 (-) 300 WP_075621332.1 GIY-YIG nuclease family protein -
  BSA145_RS00835 (BSA145_00820) - 133663..134406 (-) 744 WP_024427205.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  BSA145_RS00840 (BSA145_00825) yabA 134462..134815 (-) 354 WP_024425629.1 DNA replication initiation control protein YabA -
  BSA145_RS00845 (BSA145_00830) - 134830..135657 (-) 828 WP_075621333.1 PSP1 domain-containing protein -
  BSA145_RS00850 (BSA145_00835) holB 135660..136649 (-) 990 WP_075621334.1 DNA polymerase III subunit delta' -
  BSA145_RS00855 (BSA145_00840) - 136661..137101 (-) 441 WP_075621335.1 YaaR family protein -
  BSA145_RS00860 (BSA145_00845) - 137114..137443 (-) 330 WP_024425625.1 cyclic-di-AMP receptor -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=181301 BSA145_RS00820 WP_087975202.1 132185..132475(+) (abrB) [Bacillus safensis strain U14-5]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=181301 BSA145_RS00820 WP_087975202.1 132185..132475(+) (abrB) [Bacillus safensis strain U14-5]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAACTTCGCCGTAC
GCTAGGAATCGCTGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCTTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACAGGTGAAGTATCAGACGATAACCTTAAGCTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938

Multiple sequence alignment