Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   BWR56_RS02615 Genome accession   NZ_CP019562
Coordinates   550623..551411 (+) Length   262 a.a.
NCBI ID   WP_000940725.1    Uniprot ID   A0ABU5G4H7
Organism   Streptococcus oralis strain S.MIT/ORALIS-351     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 545623..556411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWR56_RS02600 (BWR56_0511) - 545832..547148 (-) 1317 WP_000958953.1 FAD-containing oxidoreductase -
  BWR56_RS02605 (BWR56_0512) - 547341..548567 (+) 1227 WP_076984413.1 OFA family MFS transporter -
  BWR56_RS02610 (BWR56_0513) - 548763..550340 (+) 1578 WP_049505228.1 DEAD/DEAH box helicase -
  BWR56_RS02615 (BWR56_0514) codY 550623..551411 (+) 789 WP_000940725.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  BWR56_RS02620 (BWR56_0515) - 551411..551986 (+) 576 WP_076984414.1 cysteine hydrolase family protein -
  BWR56_RS02630 (BWR56_0517) - 552546..553823 (+) 1278 WP_001068266.1 ABC transporter permease -
  BWR56_RS02635 (BWR56_0518) vex2 553836..554483 (+) 648 WP_000173736.1 ABC transporter ATP-binding subunit Vex2 -
  BWR56_RS02640 (BWR56_0519) vex3 554534..555913 (+) 1380 WP_042902562.1 ABC transporter permease subunit Vex3 -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29683.04 Da        Isoelectric Point: 5.2488

>NTDB_id=180930 BWR56_RS02615 WP_000940725.1 550623..551411(+) (codY) [Streptococcus oralis strain S.MIT/ORALIS-351]
MAHLLEKTRKITSILKRSEEQLQDELPYNAITRQLADIIDCNACIVNNKGRLLGYFMRYKTNNDRVEQFFQTKTFPEVYV
QGANMIYDTEANLPVEHDLTIFPVESRADFPDGLTTIAPIHVSGIRLGSLIIWRNDKKFEDEDLILVEIASTVVGIQLLN
FQREEDEKNIRRRTAVTMAVNTLSYSELRAVSAILAELDGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIGDIFEEVKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=180930 BWR56_RS02615 WP_000940725.1 550623..551411(+) (codY) [Streptococcus oralis strain S.MIT/ORALIS-351]
ATGGCACATTTATTAGAAAAAACAAGAAAAATCACGTCTATTCTAAAGCGCTCTGAGGAGCAACTCCAAGATGAACTTCC
TTACAATGCGATCACACGCCAGTTAGCTGATATTATTGATTGTAACGCTTGTATTGTGAATAACAAGGGACGTCTCTTAG
GCTACTTTATGCGTTATAAGACCAATAATGACCGTGTAGAACAATTCTTCCAAACCAAAACCTTCCCTGAGGTCTATGTA
CAAGGCGCAAACATGATTTATGATACGGAAGCCAATCTTCCTGTTGAACATGATTTGACTATTTTCCCTGTAGAGAGCCG
TGCGGACTTTCCAGATGGGTTGACGACCATCGCTCCGATTCATGTATCAGGGATTCGCCTAGGTTCGTTGATCATTTGGC
GTAATGACAAGAAGTTTGAAGATGAAGATTTGATTCTTGTCGAGATTGCGAGCACGGTTGTGGGAATTCAACTATTGAAC
TTCCAACGTGAAGAAGATGAGAAGAATATTCGCCGTCGTACGGCTGTTACCATGGCGGTCAACACCCTTTCCTATTCAGA
ACTTCGTGCCGTATCAGCTATTTTAGCTGAATTGGATGGAAATGAAGGGCAGCTGACGGCATCAGTTATTGCAGACCGTA
TTGGCATTACACGCTCAGTGATTGTCAATGCGCTTCGTAAATTGGAGTCTGCGGGAATTATTGAGAGTCGTTCATTAGGA
ATGAAGGGGACTTATCTCAAAGTTCTAATTGGTGATATTTTTGAGGAAGTGAAAAAGAGGGACTACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

63.359

100

0.634
  codY Bacillus subtilis subsp. subtilis str. 168

50.407

93.893

0.473