Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   A6M16_RS03900 Genome accession   NZ_CP015557
Coordinates   772431..773270 (+) Length   279 a.a.
NCBI ID   WP_015646744.1    Uniprot ID   -
Organism   Streptococcus suis strain DN13     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 767431..778270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6M16_RS03870 (A6M16_03875) - 767896..768774 (+) 879 WP_002936012.1 F0F1 ATP synthase subunit gamma -
  A6M16_RS03875 (A6M16_03880) atpD 768794..770200 (+) 1407 WP_002936008.1 F0F1 ATP synthase subunit beta -
  A6M16_RS03880 (A6M16_03885) - 770210..770626 (+) 417 WP_002936007.1 F0F1 ATP synthase subunit epsilon -
  A6M16_RS03885 (A6M16_03890) - 770686..770910 (+) 225 WP_012775178.1 DUF1146 family protein -
  A6M16_RS03890 (A6M16_03895) murA 770934..772217 (+) 1284 WP_002936006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  A6M16_RS03895 (A6M16_03900) - 772210..772401 (+) 192 WP_015646743.1 DNA-directed RNA polymerase subunit beta -
  A6M16_RS03900 (A6M16_03905) endA 772431..773270 (+) 840 WP_015646744.1 DNA/RNA non-specific endonuclease Machinery gene
  A6M16_RS03905 (A6M16_03910) - 773457..775010 (+) 1554 WP_015646745.1 MFS transporter -
  A6M16_RS03910 (A6M16_03915) - 775066..776094 (+) 1029 WP_015646746.1 sugar kinase -
  A6M16_RS03915 (A6M16_03920) uidA 776110..777909 (+) 1800 WP_063725206.1 beta-glucuronidase -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30174.37 Da        Isoelectric Point: 6.2370

>NTDB_id=180684 A6M16_RS03900 WP_015646744.1 772431..773270(+) (endA) [Streptococcus suis strain DN13]
MAKKNVKKQAMSLLSLLATIVVVAGGYLLSDNKSSNVADYSYYVNQSKASEGTPNQELASSVLTEDVKKQLGNSIEWNGA
GAFIINGNQTDLDASVASVPYGDNKTKTVQGETVPTVANALLAKSTRQYKDREETGNGRTSWTPAGWHQIHDLTGEYDHA
VDRGHLLGYALIGGLSGFDASTSNPKNIAVQTAWSNQANDQTSTGQNYFESQIRRALDKNKRIRYRVTLVYAESEDLVPV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYHSGEIAVNQ

Nucleotide


Download         Length: 840 bp        

>NTDB_id=180684 A6M16_RS03900 WP_015646744.1 772431..773270(+) (endA) [Streptococcus suis strain DN13]
ATGGCGAAGAAAAATGTAAAAAAACAAGCAATGAGTCTGCTCAGCTTATTGGCTACGATTGTTGTAGTAGCGGGTGGCTA
TCTTTTAAGTGATAACAAGAGCAGTAACGTTGCTGATTATTCCTATTATGTCAATCAGTCTAAGGCAAGTGAAGGCACAC
CTAATCAGGAACTGGCTAGTTCGGTATTGACAGAAGATGTAAAAAAGCAACTGGGAAATTCGATTGAATGGAATGGTGCT
GGAGCATTTATTATTAACGGGAATCAAACGGATTTAGATGCATCGGTTGCCAGTGTTCCTTATGGTGATAATAAGACAAA
AACAGTCCAGGGAGAAACGGTTCCAACAGTAGCCAATGCGCTTTTAGCCAAATCTACACGTCAGTATAAGGACCGTGAAG
AAACAGGAAATGGTCGGACTTCTTGGACACCTGCGGGTTGGCATCAGATTCATGATTTAACTGGAGAATATGACCATGCA
GTGGACCGTGGTCACCTCCTAGGTTATGCTTTGATTGGTGGATTGTCTGGTTTTGATGCTTCAACCAGCAATCCTAAGAA
TATTGCAGTTCAAACAGCTTGGTCCAACCAAGCTAACGACCAAACTTCAACTGGGCAGAATTATTTTGAAAGTCAGATTC
GGCGGGCCTTGGATAAAAATAAGCGTATCCGCTATCGTGTGACCTTGGTGTATGCTGAGAGTGAAGACCTTGTTCCTGTC
GGAAGCCATCTAGAGGCAAAAGCAGCAGATGGTAGCCTAGAGTTCAATGTGTTCGTTCCAAATGTGCAGAGCGGTCTCAG
TATCAACTATCATAGTGGGGAAATTGCAGTAAATCAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

69.492

84.588

0.588
  endA Streptococcus pneumoniae D39

69.492

84.588

0.588
  endA Streptococcus pneumoniae R6

69.492

84.588

0.588
  endA Streptococcus pneumoniae TIGR4

69.492

84.588

0.588

Multiple sequence alignment