Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   A2I68_RS06285 Genome accession   NZ_CP015553
Coordinates   1227820..1228500 (-) Length   226 a.a.
NCBI ID   WP_366516821.1    Uniprot ID   -
Organism   Staphylococcus carnosus strain TMW 2.1596     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1222820..1233500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2I68_RS06250 (A2I68_06115) gcvPA 1222988..1224334 (-) 1347 WP_046099281.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  A2I68_RS06255 (A2I68_06120) gcvT 1224355..1225449 (-) 1095 WP_046099280.1 glycine cleavage system aminomethyltransferase GcvT -
  A2I68_RS06260 (A2I68_06125) - 1225640..1226179 (-) 540 WP_046099279.1 shikimate kinase -
  A2I68_RS06265 (A2I68_06130) - 1226492..1226809 (-) 318 WP_253718445.1 type II secretion system protein -
  A2I68_RS06270 (A2I68_06135) - 1226766..1227062 (-) 297 WP_046099277.1 hypothetical protein -
  A2I68_RS06275 (A2I68_06140) - 1227043..1227456 (-) 414 WP_231635362.1 prepilin-type cleavage/methylation domain-containing protein -
  A2I68_RS06280 (A2I68_06145) comGC 1227476..1227802 (-) 327 WP_015900413.1 competence type IV pilus major pilin ComGC Machinery gene
  A2I68_RS06285 comGB 1227820..1228500 (-) 681 WP_366516821.1 type II secretion system F family protein Machinery gene
  A2I68_RS06290 (A2I68_06155) - 1228866..1229416 (-) 551 Protein_1234 GspE family protein -
  A2I68_RS06295 (A2I68_06160) - 1229654..1230826 (+) 1173 WP_253719811.1 site-specific integrase -
  A2I68_RS06300 (A2I68_06165) - 1230810..1231502 (+) 693 WP_046099275.1 hypothetical protein -
  A2I68_RS06305 (A2I68_06170) - 1231556..1233181 (+) 1626 WP_152648948.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 26591.95 Da        Isoelectric Point: 7.1287

>NTDB_id=180630 A2I68_RS06285 WP_366516821.1 1227820..1228500(-) (comGB) [Staphylococcus carnosus strain TMW 2.1596]
MIFMTMLFGINHFILPEFQQIYTTMDIQLSPTLKFLNDFIQHFPQIILISFTICSLFLIIIYAIYYKLSISQRLKFILKV
PMINTYFNLFKTYQIANEFSLFFQNGIMLQQISKIYINQSVDPFLKYIGEFTIQNIENGLSLPEIFKKIGCFQNELIQFI
EQGEKSGNLEIELNIYAQILLSQIEAKMNKQIKLIQPIIFLLLGLLIVSLYLIIMLPMFDMMQSIK

Nucleotide


Download         Length: 681 bp        

>NTDB_id=180630 A2I68_RS06285 WP_366516821.1 1227820..1228500(-) (comGB) [Staphylococcus carnosus strain TMW 2.1596]
ATGATTTTCATGACTATGTTATTCGGTATTAATCATTTTATACTCCCCGAATTCCAACAAATTTATACCACAATGGATAT
TCAACTTTCTCCTACCTTAAAATTTTTAAATGATTTTATTCAGCACTTTCCACAAATCATTTTAATATCATTTACTATTT
GCTCTTTGTTTTTAATAATTATATATGCAATTTACTACAAACTTTCAATAAGCCAGAGACTAAAATTCATATTAAAAGTA
CCTATGATAAATACGTATTTCAATTTATTCAAGACATATCAAATTGCTAATGAATTTTCATTGTTTTTTCAAAATGGTAT
TATGCTACAGCAAATTTCAAAAATTTATATCAATCAAAGTGTTGATCCTTTTCTTAAATATATAGGTGAATTCACAATTC
AAAATATAGAAAATGGATTGAGTCTGCCAGAAATTTTTAAAAAGATAGGCTGTTTTCAAAACGAGCTTATTCAATTCATT
GAGCAAGGTGAAAAAAGCGGAAACCTTGAAATAGAACTAAATATTTATGCCCAGATTTTATTAAGTCAAATTGAAGCTAA
AATGAATAAACAAATCAAGTTAATTCAACCAATAATATTTTTATTATTAGGATTGCTTATTGTTTCCCTTTATCTAATTA
TTATGTTGCCTATGTTCGATATGATGCAATCCATTAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(97-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

49.778

99.558

0.496
  comGB Staphylococcus aureus N315

49.778

99.558

0.496

Multiple sequence alignment