Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   A7E59_RS06785 Genome accession   NZ_CP015552
Coordinates   1386601..1387266 (+) Length   221 a.a.
NCBI ID   WP_052719424.1    Uniprot ID   -
Organism   Staphylococcus carnosus strain TMW 2.1538     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1381601..1392266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7E59_RS06765 (A7E59_06615) - 1381905..1383530 (-) 1626 WP_152648948.1 hypothetical protein -
  A7E59_RS06770 (A7E59_06620) - 1383584..1384276 (-) 693 WP_046099275.1 hypothetical protein -
  A7E59_RS06775 (A7E59_06625) - 1384260..1385438 (-) 1179 WP_046099276.1 site-specific integrase -
  A7E59_RS06780 (A7E59_06630) - 1385670..1386220 (+) 551 Protein_1312 GspE family protein -
  A7E59_RS06785 comGB 1386601..1387266 (+) 666 WP_052719424.1 type II secretion system F family protein Machinery gene
  A7E59_RS06790 (A7E59_06640) comGC 1387284..1387610 (+) 327 WP_015900413.1 competence type IV pilus major pilin ComGC Machinery gene
  A7E59_RS06795 (A7E59_06645) - 1387630..1388043 (+) 414 WP_231635362.1 prepilin-type cleavage/methylation domain-containing protein -
  A7E59_RS06800 (A7E59_06650) - 1388024..1388320 (+) 297 WP_046099277.1 hypothetical protein -
  A7E59_RS06805 (A7E59_06655) - 1388346..1388594 (+) 249 WP_235318552.1 hypothetical protein -
  A7E59_RS06810 (A7E59_06665) - 1388907..1389446 (+) 540 WP_046099279.1 shikimate kinase -
  A7E59_RS06815 (A7E59_06670) gcvT 1389637..1390731 (+) 1095 WP_046099280.1 glycine cleavage system aminomethyltransferase GcvT -
  A7E59_RS06820 (A7E59_06675) gcvPA 1390752..1392098 (+) 1347 WP_046099281.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25968.12 Da        Isoelectric Point: 7.1287

>NTDB_id=180605 A7E59_RS06785 WP_052719424.1 1386601..1387266(+) (comGB) [Staphylococcus carnosus strain TMW 2.1538]
MLFGINHFILPEFQQIYTTMDIQLSPTLKFLNDFIQHFPQIILISFTICSLFLIIIYAIYYKLSISQRLKFILKVPMINT
YFNLFKTYQIANEFSLFFQNGIMLQQISKIYINQSVDPFLKYIGEFTIQNIENGLSLPEIFKKIGCFQNELIQFIEQGEK
SGNLEIELNIYAQILLSQIEAKMNKQIKLIQPIIFLLLGLLIVSLYLIIMLPMFDMMQSIK

Nucleotide


Download         Length: 666 bp        

>NTDB_id=180605 A7E59_RS06785 WP_052719424.1 1386601..1387266(+) (comGB) [Staphylococcus carnosus strain TMW 2.1538]
ATGTTATTCGGTATTAATCATTTTATACTCCCCGAATTCCAACAAATTTATACCACAATGGATATTCAACTTTCTCCTAC
CTTAAAATTTTTAAATGATTTTATTCAGCACTTTCCACAAATCATTTTAATATCATTTACTATTTGCTCTTTGTTTTTAA
TAATTATATATGCAATTTACTACAAACTTTCAATAAGCCAGAGACTAAAATTCATATTAAAAGTACCTATGATAAATACG
TATTTCAATTTATTCAAGACATATCAAATTGCTAATGAATTTTCATTGTTTTTTCAAAATGGTATTATGCTACAGCAAAT
TTCAAAAATTTATATCAATCAAAGTGTTGATCCTTTTCTTAAATATATAGGTGAATTCACAATTCAAAATATAGAAAATG
GATTGAGTCTGCCAGAAATTTTTAAAAAGATAGGCTGTTTTCAAAACGAGCTTATTCAATTCATTGAGCAAGGTGAAAAA
AGCGGAAACCTTGAAATAGAACTAAATATTTATGCCCAGATTTTATTAAGTCAAATTGAAGCTAAAATGAATAAACAAAT
CAAGTTAATTCAACCAATAATATTTTTATTATTAGGATTGCTTATTGTTTCCCTTTATCTAATTATTATGTTGCCTATGT
TCGATATGATGCAATCCATTAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(92-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

49.774

100

0.498
  comGB Staphylococcus aureus N315

49.774

100

0.498

Multiple sequence alignment