Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   A6K30_RS02120 Genome accession   NZ_CP015528
Coordinates   423921..424436 (+) Length   171 a.a.
NCBI ID   WP_002780549.1    Uniprot ID   A0A3Z9GFK4
Organism   Campylobacter coli strain YH501     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 418921..429436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6K30_RS02095 (A6K30_02095) - 419377..419715 (+) 339 WP_002777761.1 hypothetical protein -
  A6K30_RS02100 (A6K30_02100) - 419724..420449 (+) 726 WP_002780542.1 phosphatidate cytidylyltransferase -
  A6K30_RS02105 (A6K30_02105) dxr 420446..421522 (+) 1077 WP_002777756.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  A6K30_RS02110 (A6K30_02110) - 421519..422913 (+) 1395 WP_002777754.1 M99 family carboxypeptidase catalytic domain-containing protein -
  A6K30_RS02115 (A6K30_02115) tsaD 422910..423917 (+) 1008 WP_002783934.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  A6K30_RS02120 (A6K30_02120) ctsG 423921..424436 (+) 516 WP_002780549.1 type II secretion system protein Machinery gene
  A6K30_RS02125 (A6K30_02125) - 424436..425686 (+) 1251 WP_052786342.1 DUF2920 family protein -
  A6K30_RS02130 (A6K30_02130) - 425697..427525 (+) 1829 Protein_403 6-hydroxymethylpterin diphosphokinase MptE-like protein -
  A6K30_RS02135 (A6K30_02135) - 427522..429347 (+) 1826 Protein_404 motility associated factor glycosyltransferase family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18764.60 Da        Isoelectric Point: 6.4693

>NTDB_id=180363 A6K30_RS02120 WP_002780549.1 423921..424436(+) (ctsG) [Campylobacter coli strain YH501]
MKRAFTILELVFVIVILGILAAIALPKFSSSRDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDEKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=180363 A6K30_RS02120 WP_002780549.1 423921..424436(+) (ctsG) [Campylobacter coli strain YH501]
GTGAAAAGAGCTTTTACTATATTAGAACTTGTTTTTGTTATCGTGATTTTAGGAATTTTAGCAGCGATTGCTTTGCCAAA
ATTCAGTTCTAGTAGAGATGAAGCTGAAGTGAGTAAATCCTTAAACAATCTTAAAACTTTAATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGAGAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Z9GFK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

91.813

100

0.918

Multiple sequence alignment