Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   A361_RS21515 Genome accession   NZ_CP015506
Coordinates   4269493..4271862 (-) Length   789 a.a.
NCBI ID   WP_026041804.1    Uniprot ID   A0A160MEP1
Organism   Cytobacillus oceanisediminis 2691     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4264493..4276862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A361_RS21500 (A361_21505) dtd 4266044..4266484 (-) 441 WP_009333083.1 D-aminoacyl-tRNA deacylase -
  A361_RS21505 (A361_21510) - 4266499..4268694 (-) 2196 WP_019382910.1 RelA/SpoT family protein -
  A361_RS21510 (A361_21515) - 4268990..4269502 (-) 513 WP_009333085.1 adenine phosphoribosyltransferase -
  A361_RS21515 (A361_21520) recJ 4269493..4271862 (-) 2370 WP_026041804.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  A361_RS21520 (A361_21525) - 4272025..4272342 (-) 318 WP_019382912.1 LapA family protein -
  A361_RS21525 (A361_21530) - 4272367..4273269 (-) 903 WP_009333088.1 cation diffusion facilitator family transporter -
  A361_RS21530 (A361_21535) secDF 4273410..4275674 (-) 2265 WP_019382913.1 protein translocase subunit SecDF -
  A361_RS21535 (A361_21540) - 4275980..4276276 (-) 297 WP_019382914.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 789 a.a.        Molecular weight: 88135.44 Da        Isoelectric Point: 5.0957

>NTDB_id=180172 A361_RS21515 WP_026041804.1 4269493..4271862(-) (recJ) [Cytobacillus oceanisediminis 2691]
MLHSRTRWIVRQTQEDKVQQLSKELNISPLAASLLINRGMDTVDSARYFLLDKDQEFHDPFLMTDMAKAVSRIKEAIEKQ
EPILIFGDYDADGVTSTSVMMMALRDLGADVQFYIPNRFTEGYGPNIPAFEQAADTGIRLIITVDTGISAVNEAKAAKEL
GMDLIITDHHEPGHELPEAWAIVHPKHPESTYPFRELAGVGVAFKLAHALYGEMPDHLLEIAAIGTIADLVSLTGENRLI
AKRGIQKLKSTKNTGLKALFKAAGIELPSINEETIGFTIGPRLNAAGRLESADPAVDLLLTNDPYEAQAIAEEIEMLNKE
RQAIVNDIAAQAVKEVETNFPISENSVIVVGKEGWNAGVVGIVASKLVEKFYRPAIVLSYDSDKGLAKGSARSIKGFDLF
KNLSECRDILPHFGGHPMAAGMTLSIESVDDLRDRLNTLANEQLTEEDFIPVTSIDGVFHLKDISLSSIEEMQLLAPFGM
GNPKPKVLIKEANIAAMRKIGSDQTHIKVTIENDGSSLDGIGFGLGHLHEQISPYSKLSVIGELSINEWNNIKKPQIFLQ
DMAVNSWQLFDIRSLKRLERLQSVIPDVNTTWIFFNEEHISKFRTYAGESMVKISSEEDAEALKLDGSNIVLADMPPSKE
MLAHVFSGKNPARIYAHFYKEDSDYFSTIPTRDHFKWYFALLAKKGSVDIRRHGNDIAKHKGWSRETVDFMSQVFFELDF
VKINNGVISLNNTSIKRDLADSRTYQLKQAQYTLESDLLYSSFQQLKDWFDEVMQGAVKLEEAKEEKWT

Nucleotide


Download         Length: 2370 bp        

>NTDB_id=180172 A361_RS21515 WP_026041804.1 4269493..4271862(-) (recJ) [Cytobacillus oceanisediminis 2691]
ATGTTACATTCAAGAACGCGATGGATTGTTCGGCAAACACAGGAGGATAAGGTGCAGCAGCTTTCAAAGGAATTGAATAT
TTCTCCACTGGCCGCATCGCTGTTAATTAATCGCGGAATGGATACCGTTGATTCAGCACGGTATTTTTTATTGGATAAAG
ACCAGGAATTTCATGATCCTTTTTTAATGACAGATATGGCAAAAGCTGTTTCCAGAATAAAAGAAGCAATTGAAAAACAG
GAACCTATCTTAATTTTTGGTGATTATGATGCGGATGGAGTGACAAGCACTTCTGTCATGATGATGGCACTTAGAGATCT
CGGTGCTGACGTCCAATTCTACATACCGAATCGATTTACTGAAGGTTATGGACCAAATATCCCGGCTTTTGAACAAGCCG
CTGATACTGGCATCCGTTTAATTATTACCGTAGATACAGGGATATCGGCTGTAAACGAAGCAAAGGCTGCAAAAGAGCTT
GGAATGGATTTGATTATTACAGATCACCATGAGCCTGGCCATGAGCTTCCTGAAGCATGGGCAATTGTGCATCCTAAGCA
TCCGGAAAGCACATACCCATTCCGGGAACTGGCCGGTGTTGGAGTAGCATTTAAACTTGCACATGCGCTATATGGTGAAA
TGCCTGATCACCTCTTGGAAATAGCTGCAATCGGCACAATTGCCGACCTTGTTTCTTTAACGGGAGAGAACAGGCTTATT
GCCAAGCGCGGGATTCAAAAGCTGAAATCAACTAAGAATACAGGTTTGAAAGCCTTGTTTAAAGCGGCTGGAATTGAACT
TCCATCCATTAATGAAGAAACAATCGGCTTTACAATCGGGCCTCGCCTCAATGCAGCCGGCAGGCTTGAAAGTGCGGATC
CGGCAGTGGATTTGCTTCTGACAAATGATCCTTATGAAGCACAAGCCATTGCTGAAGAAATTGAAATGTTAAATAAAGAG
AGGCAAGCTATTGTCAATGACATTGCAGCACAAGCGGTTAAAGAGGTTGAAACTAATTTTCCAATCAGTGAGAATTCAGT
AATTGTTGTAGGCAAAGAAGGCTGGAATGCCGGTGTAGTTGGAATAGTAGCTTCGAAGCTTGTTGAAAAGTTTTACCGCC
CAGCTATTGTTCTCAGTTATGACAGTGATAAAGGGCTGGCAAAGGGATCAGCAAGAAGTATTAAAGGTTTTGATCTGTTC
AAAAATCTTTCTGAATGCCGGGATATCCTTCCCCACTTTGGGGGCCATCCAATGGCGGCAGGAATGACCTTGTCAATTGA
ATCGGTCGATGACCTCAGGGATAGACTGAATACTCTTGCAAATGAACAGCTGACCGAGGAAGATTTTATTCCAGTAACCA
GCATTGATGGCGTCTTCCATCTAAAGGATATCAGCCTCTCTTCTATTGAAGAAATGCAGCTGCTTGCCCCATTTGGGATG
GGAAATCCAAAACCTAAAGTCTTGATAAAAGAGGCCAATATTGCCGCTATGAGAAAAATCGGATCTGATCAAACTCATAT
AAAGGTCACCATCGAAAATGATGGATCTTCCCTTGATGGAATCGGCTTTGGCCTCGGACATTTGCATGAGCAGATTTCAC
CATATTCCAAGCTATCGGTTATTGGCGAATTATCCATTAATGAATGGAATAATATTAAAAAACCGCAAATCTTCCTGCAG
GATATGGCAGTGAACTCCTGGCAGCTATTTGATATCCGGAGTTTAAAGCGGCTCGAAAGGCTCCAAAGCGTCATTCCTGA
CGTAAATACTACTTGGATATTCTTTAATGAGGAACATATATCCAAATTCAGGACATATGCAGGGGAAAGTATGGTGAAAA
TATCATCTGAAGAGGATGCAGAAGCATTAAAACTAGATGGCTCAAACATCGTGCTTGCTGATATGCCGCCTTCAAAGGAA
ATGCTTGCTCATGTATTCTCCGGAAAAAACCCTGCCAGAATTTATGCTCATTTTTATAAAGAGGACAGTGACTATTTCAG
CACTATTCCAACAAGAGATCATTTTAAGTGGTATTTTGCCCTGCTTGCTAAAAAAGGCTCGGTCGATATCAGGCGTCATG
GGAATGATATAGCGAAGCATAAGGGATGGAGCAGGGAAACGGTAGATTTTATGTCTCAAGTGTTTTTTGAATTGGATTTT
GTTAAAATAAATAATGGTGTCATTTCGTTAAACAATACATCAATTAAACGTGATTTAGCTGATTCGCGAACCTATCAGCT
TAAACAGGCACAATACACTCTTGAGAGCGATTTGCTCTATTCATCCTTTCAGCAGCTCAAAGACTGGTTTGATGAAGTTA
TGCAAGGGGCTGTAAAACTTGAGGAGGCAAAGGAAGAAAAATGGACTTAA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(455-561)

DHHA1 domain (DHHA1)

(317-438)

DHH family (DHH)

(83-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-770)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A160MEP1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

56.83

98.352

0.559

Multiple sequence alignment