Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   A1D33_RS01275 Genome accession   NZ_CP015443
Coordinates   373329..374108 (-) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain CC09     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 368329..379108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1D33_RS01245 (A1D33_001245) fliH 368373..369128 (-) 756 WP_062623354.1 flagellar assembly protein FliH -
  A1D33_RS01250 (A1D33_001250) fliG 369121..370137 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  A1D33_RS01255 (A1D33_001255) fliF 370150..371760 (-) 1611 WP_062623353.1 flagellar basal-body MS-ring/collar protein FliF -
  A1D33_RS01260 (A1D33_001260) fliE 371803..372123 (-) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  A1D33_RS01265 (A1D33_001265) flgC 372134..372586 (-) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  A1D33_RS01270 (A1D33_001270) flgB 372586..372975 (-) 390 WP_062623352.1 flagellar basal body rod protein FlgB -
  A1D33_RS01275 (A1D33_001275) codY 373329..374108 (-) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  A1D33_RS01280 (A1D33_001280) hslU 374146..375549 (-) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  A1D33_RS01285 (A1D33_001285) hslV 375566..376111 (-) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  A1D33_RS01290 (A1D33_001290) xerC 376127..377044 (-) 918 WP_039251511.1 tyrosine recombinase XerC -
  A1D33_RS01295 (A1D33_001295) trmFO 377114..378421 (-) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=179815 A1D33_RS01275 WP_003154263.1 373329..374108(-) (codY) [Bacillus velezensis strain CC09]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=179815 A1D33_RS01275 WP_003154263.1 373329..374108(-) (codY) [Bacillus velezensis strain CC09]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment