Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   GFC29_RS08940 Genome accession   NZ_CP015436
Coordinates   1850185..1852542 (-) Length   785 a.a.
NCBI ID   WP_044744637.1    Uniprot ID   A0A167TXI5
Organism   Anoxybacillus sp. B7M1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1845185..1857542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFC29_RS08920 (GFC29_1837) - 1845284..1845541 (-) 258 WP_044744634.1 IreB family regulatory phosphoprotein -
  GFC29_RS08925 (GFC29_1838) alaS 1845615..1848251 (-) 2637 WP_044744635.1 alanine--tRNA ligase -
  GFC29_RS08930 (GFC29_1839) - 1848580..1849641 (-) 1062 WP_369818756.1 AI-2E family transporter -
  GFC29_RS19135 (GFC29_1840) - 1849731..1849865 (-) 135 WP_172798665.1 DUF3918 family protein -
  GFC29_RS08935 (GFC29_1841) - 1849887..1850078 (-) 192 WP_044744703.1 hypothetical protein -
  GFC29_RS08940 (GFC29_1842) recD2 1850185..1852542 (-) 2358 WP_044744637.1 ATP-dependent RecD-like DNA helicase Machinery gene
  GFC29_RS08945 (GFC29_1843) - 1852562..1853224 (-) 663 WP_044744638.1 tetratricopeptide repeat protein -
  GFC29_RS08950 (GFC29_1844) mnmA 1853301..1854416 (-) 1116 WP_044744639.1 tRNA 2-thiouridine(34) synthase MnmA -
  GFC29_RS08955 (GFC29_1845) - 1854429..1855574 (-) 1146 WP_044744640.1 cysteine desulfurase family protein -
  GFC29_RS08960 (GFC29_1846) cymR 1855598..1856014 (-) 417 WP_044744641.1 cysteine metabolism transcriptional regulator CymR -
  GFC29_RS08965 (GFC29_1847) - 1856025..1856663 (-) 639 WP_044744642.1 YitT family protein -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 88546.29 Da        Isoelectric Point: 5.0749

>NTDB_id=179720 GFC29_RS08940 WP_044744637.1 1850185..1852542(-) (recD2) [Anoxybacillus sp. B7M1]
MQQQESWALGEKSFIKGTHIVTIFHNESNLYSVVRIHVEETNEGYDEQEVVVTGYFPRMNEHDVYVFYGAFKDHPRFGRQ
YVAEYFRKEMPQTKEGLIYYLSSDLFKGIGKKTAEQIVEALGDQAISVILADPEALAKVPKLPKNKAKELYETLKEHQGL
EQIMIALSQFGFGPQLSMKIYQVYKEAALDVIQKNPYQLVEDVEGIGFRRADELGQQLGLSGSHPDRVRAACLYVIESDC
LQEGHVYVTKEQLLFKAKQLLESKRGEDIPPDMIERELLDLAKEEKVIHEDGRFYIPTLYFAEKGIITNIKRLLEQKVTR
FPEAEFLLALGRLEERLDVQYGPLQKEAIQQAISSPLFILTGGPGTGKTTVIKGIVEIFADLHGVSLDPKDYHKENPFPI
LLAAPTGRAAKRMSEATGLPAMTIHRLLGYNAAEGFTHHEDEPIEGNLLIVDEMSMVDTWLANQLLKSLPTGMQVILVGD
EDQLPSVGPGQVLKDLLKTSRIPTIRLTEVYRQAEGSSIIELAHCMKKGELPADLSSPKTDRSFIRCKAEQVVDVVRQIA
DNAWKKGYSVKDIQVLAPMYRGPAGIDRLNRTLQELFNPKSPQKRELSSGETVYRVGDKVLQLVNQPDQNVFNGDIGEIV
AIFYAKENTEQQDLVVVSFDGNEVTYTRQDLTQITHAYCCSIHKAQGSEFPIVILPVVKSYYRMLQRNLLYTAVTRSKKF
LILCGEEEAFRIGTARCDDGVRQTTLAEKIQQLFEPADETELPLDDAGIGMENVSPYDFMIEETK

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=179720 GFC29_RS08940 WP_044744637.1 1850185..1852542(-) (recD2) [Anoxybacillus sp. B7M1]
TTGCAGCAGCAAGAATCATGGGCGTTAGGGGAAAAATCGTTTATTAAAGGGACGCATATCGTCACTATTTTTCATAACGA
AAGTAACCTTTATTCCGTGGTCCGCATTCACGTTGAAGAAACGAATGAAGGGTATGACGAGCAAGAGGTTGTTGTAACTG
GATATTTCCCGCGTATGAACGAACATGATGTTTATGTGTTTTACGGCGCTTTTAAAGATCACCCCAGATTTGGACGGCAA
TATGTAGCCGAGTATTTTCGAAAAGAAATGCCGCAAACAAAGGAAGGGTTGATCTATTATTTATCGAGCGATTTGTTTAA
GGGGATCGGAAAGAAAACAGCGGAACAAATTGTGGAAGCGCTCGGGGACCAAGCGATTTCAGTGATACTAGCAGATCCGG
AAGCGCTCGCGAAAGTGCCTAAGCTTCCGAAAAACAAAGCGAAAGAGCTATACGAAACGTTAAAGGAGCACCAAGGCCTT
GAACAAATTATGATTGCTCTTTCTCAGTTCGGCTTTGGTCCGCAGCTGTCAATGAAAATTTACCAAGTATATAAAGAAGC
TGCACTTGATGTCATTCAAAAAAATCCGTATCAGCTTGTCGAGGATGTAGAAGGGATTGGGTTTCGGCGAGCCGATGAGT
TAGGCCAGCAGCTCGGCCTTTCCGGCAGCCATCCAGATCGTGTCCGAGCCGCCTGTTTATATGTCATCGAAAGCGATTGT
TTGCAAGAGGGGCATGTATATGTGACAAAAGAACAGTTGCTTTTTAAAGCTAAGCAGCTGCTTGAATCGAAAAGAGGAGA
GGACATTCCTCCTGACATGATTGAGCGTGAACTGCTTGATCTAGCCAAAGAGGAAAAAGTCATTCATGAAGATGGCCGCT
TTTATATTCCGACTCTTTACTTTGCGGAAAAAGGAATCATCACTAATATAAAGCGCCTGCTTGAACAAAAGGTAACAAGA
TTTCCAGAAGCGGAATTTTTGCTGGCGCTCGGCCGGTTGGAGGAGCGGTTGGATGTACAATATGGCCCGTTGCAAAAGGA
AGCGATTCAACAAGCGATTTCTTCCCCTCTGTTTATTTTGACAGGCGGGCCGGGAACGGGAAAAACGACGGTGATAAAAG
GGATTGTGGAGATTTTTGCCGACCTCCACGGCGTTTCGCTTGACCCGAAGGATTATCATAAAGAAAATCCTTTTCCGATT
TTGCTTGCTGCGCCAACTGGGAGAGCCGCAAAACGAATGAGCGAAGCGACAGGATTACCAGCGATGACGATCCATCGTTT
ACTTGGTTATAATGCTGCAGAAGGATTTACTCATCATGAAGATGAACCGATTGAAGGAAATTTGCTCATTGTCGATGAAA
TGTCCATGGTGGACACATGGCTAGCTAACCAATTGCTGAAGTCCCTTCCAACTGGTATGCAAGTCATTTTGGTCGGTGAT
GAGGATCAATTGCCGTCAGTCGGACCGGGGCAAGTATTAAAGGATTTGTTAAAAACGTCGCGAATTCCTACTATTCGCTT
GACAGAAGTATATCGTCAAGCAGAAGGATCCTCCATCATTGAATTGGCCCATTGTATGAAAAAAGGGGAGCTTCCTGCTG
ATCTAAGCTCTCCGAAAACAGACCGTTCCTTTATTCGCTGTAAAGCTGAACAAGTGGTTGATGTCGTGAGGCAAATTGCT
GATAATGCGTGGAAAAAAGGATATTCGGTAAAAGATATTCAAGTGCTCGCCCCGATGTATCGCGGTCCTGCCGGCATCGA
TCGTCTCAATCGAACGCTTCAAGAGCTGTTTAATCCAAAATCGCCACAAAAGCGCGAGCTGTCCAGCGGCGAAACGGTTT
ATCGCGTTGGCGATAAGGTGTTGCAGCTTGTCAATCAACCGGATCAAAATGTGTTTAATGGCGATATTGGTGAAATTGTC
GCCATCTTTTACGCGAAAGAAAATACGGAACAGCAGGACTTGGTTGTCGTATCCTTTGATGGAAACGAAGTCACTTATAC
AAGACAGGATTTAACACAAATTACCCACGCTTACTGCTGTTCGATTCATAAGGCGCAGGGCAGTGAATTTCCGATTGTGA
TTTTGCCGGTGGTGAAAAGCTATTATCGAATGCTACAGCGGAATTTGTTATATACAGCGGTGACAAGAAGCAAAAAATTT
TTAATTTTATGCGGTGAGGAGGAAGCTTTTCGCATCGGAACGGCACGCTGTGATGACGGGGTGAGGCAAACGACATTAGC
TGAAAAAATTCAACAGCTGTTTGAGCCTGCTGATGAAACGGAGCTGCCGTTAGATGATGCGGGGATCGGGATGGAAAACG
TTTCACCGTATGACTTTATGATAGAAGAAACAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-658)

AAA domain (AAA_30)

(341-548)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A167TXI5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

60.93

100

0.618

Multiple sequence alignment